Configuration
SpliceBERT (zero-shot, Wang et al. 2026)
SpliceBERT evaluated zero-shot by Wang et al. 2026.
Overview
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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
36 evaluations · 36 results. Different protocols are not a single leaderboard.
Sorted by AUROC (CLS embedding; mean over random samplings of sequence pairs) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Protocol and dataset | AUROC (CLS embedding; mean over random samplings of sequence pairs) | AUROC (FFT embedding; mean over random samplings of sequence pairs) | F1 (attention; mean over structures) | F1 (attention; median over structures) | F1 (CLS embedding; mean over random samplings of sequence pairs) | F1 (FFT embedding; mean over random samplings of sequence pairs) | MCC (attention; mean over structures) | MCC (attention; median over structures) | MCC (CLS embedding; mean over random samplings of sequence pairs) | MCC (FFT embedding; mean over random samplings of sequence pairs) | One minus overlap ratio (CLS embedding; mean over random samplings of sequence pairs) | One minus overlap ratio (FFT embedding; mean over random samplings of sequence pairs) | Absolute spearman correlation (PLL-D; mean over assays) | Absolute spearman correlation (PLL-D; median over assays) | Absolute spearman correlation (WT-LLR; mean over assays) | Absolute spearman correlation (WT-LLR; median over assays) | AUROC (PLL-D; mean over assays) | AUROC (PLL-D; median over assays) | AUROC (WT-LLR; mean over assays) | AUROC (WT-LLR; median over assays) | MCC (PLL-D; mean over assays) | MCC (PLL-D; median over assays) | MCC (WT-LLR; mean over assays) | MCC (WT-LLR; median over assays) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), CLS embedding, AUC (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | 0.804±0.001 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), CLS embedding, AUC (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | 0.727±0.001 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), WT-LLR, AUC (mean over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.631±0.074 | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), WT-LLR, AUC (median over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.612 | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), WT-LLR, MCC (mean over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.194±0.109 | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), WT-LLR, MCC (median over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.176 |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), WT-LLR, SR (mean over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.268±0.149 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), WT-LLR, SR (median over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.202 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), PLL-D, AUC (mean over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.550±0.044 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), PLL-D, AUC (median over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.543 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), PLL-D, MCC (mean over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.071±0.059 | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), PLL-D, MCC (median over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.063 | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), PLL-D, SR (mean over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.097±0.088 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot fitness, RNAGym ncRNA DMS assays (31 assays), PLL-D, SR (median over assays), RNAGym ncRNA DMS assays (31 assays) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.079 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS test set (70 PDB structures), attention, F1 score (mean over structures), TS test set (70 PDB structures) (Wang et al. 2026) | Not reported | Not reported | 0.043±0.039 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS test set (70 PDB structures), attention, F1 score (median over structures), TS test set (70 PDB structures) (Wang et al. 2026) | Not reported | Not reported | Not reported | 0.034 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS test set (70 PDB structures), attention, MCC (mean over structures), TS test set (70 PDB structures) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.033±0.045 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS test set (70 PDB structures), attention, MCC (median over structures), TS test set (70 PDB structures) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.022 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS-Hard test set (15 PDB structures), attention, F1 score (mean over structures), TS-Hard test set (15 PDB structures) (Wang et al. 2026) | Not reported | Not reported | 0.030±0.023 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS-Hard test set (15 PDB structures), attention, F1 score (median over structures), TS-Hard test set (15 PDB structures) (Wang et al. 2026) | Not reported | Not reported | Not reported | 0.034 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS-Hard test set (15 PDB structures), attention, MCC (mean over structures), TS-Hard test set (15 PDB structures) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.020±0.026 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot secondary structure, TS-Hard test set (15 PDB structures), attention, MCC (median over structures), TS-Hard test set (15 PDB structures) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.025 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), FFT embedding, 1 − OR (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.567±0.002 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), FFT embedding, AUC (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | Not reported | 0.762±0.001 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), FFT embedding, F1 (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | 0.706±0.001 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), FFT embedding, MCC (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.341±0.001 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), FFT embedding, 1 − OR (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.487±0.003 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), FFT embedding, AUC (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | Not reported | 0.731±0.002 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), FFT embedding, F1 (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | 0.712±0.000 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), FFT embedding, MCC (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.312±0.001 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), CLS embedding, 1 − OR (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.633±0.002 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), CLS embedding, F1 (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | 0.735±0.001 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot family classification, RfamSample (561 Rfam families), CLS embedding, MCC (mean over repeated random samplings of sequence pairs), RfamSample (561 Rfam families) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.426±0.002 (best in column) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), CLS embedding, 1 − OR (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.469±0.002 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), CLS embedding, F1 (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | 0.709±0.001 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
| SpliceBERT (zero-shot, Wang et al. 2026)Evaluation | Wang et al. 2026 zero-shot RNA type classification, ArchiveII-Nr (1273 RNAs), CLS embedding, MCC (mean over repeated random samplings of sequence pairs), ArchiveII-Nr (1273 RNAs) (Wang et al. 2026) | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | 0.308±0.002 | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported | Not reported |
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- Zero-shot benchmarking of RNA language models: Supplementary Information · Original source · bbag098_supplymentary_information_20260209.docx from the Europe PMC supplementary files archive for PMC12963973
Technical metadata and extraction receipts
Stable ID: lit-rna-20261011-rnalm-zeroshot-config-splicebert-wang2026
- areas
- rna-transcriptomes
- contexts
- research
- method types
- foundation_model
- reported name
- SpliceBERT
- foundation model eligible
- true
- parameters
- Pretrained weights used without fine-tuning (zero-shot); attention maps, embeddings or token logits read out as described in the Methods
- access reuse
- Public download location listed in Supplementary Table 1
- source locator
- Supplementary Table 1 row 'SpliceBERT'
- checkpoint
- https://github.com/chenkenbio/SpliceBERT (downloaded 2024/8/11; version column 'SpliceBERT.1024nt'; variant label in results tables 'none')
- version
- SpliceBERT.1024nt
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- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (WT-LLR, MCC, mean)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (WT-LLR, MCC, median)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (WT-LLR, SR, mean)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (WT-LLR, SR, median)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (PLL-D, AUC, mean)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (PLL-D, AUC, median)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (PLL-D, MCC, mean)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (PLL-D, MCC, median)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (PLL-D, SR, mean)
- system: SpliceBERT zero-shot fitness on RNAGym ncRNA DMS assays (31 assays) (PLL-D, SR, median)
- system: SpliceBERT zero-shot secondary structure on TS test set (70 PDB structures) (attention, F1 score, mean)
- system: SpliceBERT zero-shot secondary structure on TS test set (70 PDB structures) (attention, F1 score, median)
- system: SpliceBERT zero-shot secondary structure on TS test set (70 PDB structures) (attention, MCC, mean)
- system: SpliceBERT zero-shot secondary structure on TS test set (70 PDB structures) (attention, MCC, median)
- system: SpliceBERT zero-shot secondary structure on TS-Hard test set (15 PDB structures) (attention, F1 score, mean)
- system: SpliceBERT zero-shot secondary structure on TS-Hard test set (15 PDB structures) (attention, F1 score, median)
- system: SpliceBERT zero-shot secondary structure on TS-Hard test set (15 PDB structures) (attention, MCC, mean)
- system: SpliceBERT zero-shot secondary structure on TS-Hard test set (15 PDB structures) (attention, MCC, median)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (FFT embedding, 1 − OR, sampled-mean)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (FFT embedding, AUC, sampled-mean)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (FFT embedding, F1, sampled-mean)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (FFT embedding, MCC, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (FFT embedding, 1 − OR, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (FFT embedding, AUC, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (FFT embedding, F1, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (FFT embedding, MCC, sampled-mean)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (CLS embedding, 1 − OR, sampled-mean)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (CLS embedding, AUC, sampled-mean)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (CLS embedding, F1, sampled-mean)
- system: SpliceBERT zero-shot family classification on RfamSample (561 Rfam families) (CLS embedding, MCC, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (CLS embedding, 1 − OR, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (CLS embedding, AUC, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (CLS embedding, F1, sampled-mean)
- system: SpliceBERT zero-shot RNA type classification on ArchiveII-Nr (1273 RNAs) (CLS embedding, MCC, sampled-mean)