AgentsRelease 2026-10-22-1b7cf027e4f6
Connect your agent
Let a coding agent query the reviewed evidence and run the benchmarks on your machine, for example to check a published result against your own model or configuration.
Install in Claude Code
The bio-model-benchmarks plugin. The server needs uv.
/plugin marketplace add rewire-bio/rewire-benchmarks
/plugin install bio-model-benchmarks@rewire-benchmarksHow it works
- 1
Install the plugin
Two commands in Claude Code add a benchmark skill and a read-only server for the database's knowledge graph.
- 2
Ask about the evidence
The agent finds models, benchmarks, published results and their sources, with review status and caveats.
- 3
Reproduce and compare
It runs a benchmark with the rewirebench tool on your machine and sets your result beside the published one.
Try asking
Which models have published results on the MFASS splicing benchmark, and how do they compare with the baseline?Reproduce the published MFASS-v2 k-mer baseline locally and compare it with the published values.Run my model through the ProteinGym protocol next to the registered baselines and report the difference.
Other ways to connect
Adds just the rewire-benchmark-graph MCP server to Claude Code, without the skill.
claude mcp add rewire-benchmark-graph -- uvx --from git+https://github.com/rewire-bio/rdf-kg-mcp@v0.1.0 rdf-kg-mcp serve https://benchmarks.rewirebio.io/agents/kg.tar.gzAdd this entry to the client's MCP configuration, then give the agent the skill text as instructions.
{
"mcpServers": {
"rewire-benchmark-graph": {
"command": "uvx",
"args": [
"--from",
"git+https://github.com/rewire-bio/rdf-kg-mcp@v0.1.0",
"rdf-kg-mcp",
"serve",
"https://benchmarks.rewirebio.io/agents/kg.tar.gz"
]
}
}
}https://benchmarks.rewirebio.io/agents/kg.tar.gz follows the release this site serves, so the server picks up new releases when it restarts. For an exact reproduction, pin release 2026-10-22-1b7cf027e4f6:
claude mcp add rewire-benchmark-graph -- uvx --from git+https://github.com/rewire-bio/rdf-kg-mcp@v0.1.0 rdf-kg-mcp serve https://github.com/rewire-bio/rewire-benchmark-data/releases/download/kg/2026-10-22-1b7cf027e4f6/kg-2026-10-22-1b7cf027e4f6.tar.gzThe server checks every file against the bundle's manifest before loading it, and it is read-only.
What happens where
Runs on your machine
Your model, weights and data are not sent to Rewire.
Nothing submitted for you
Submitting a result to the database is a separate step that needs your explicit consent.
Checked monthly
Each use case's evidence is re-checked against new publications every month.
Reproduce, don't assume
A source-checked result is a reviewed transcription of a paper's number. Running it yourself is how you find out.
For agents reading this site: plain-text versions at /llms.txt and /agents.md.