# Biological model benchmark database

> Reviewed published results for DNA, RNA, protein and cell models, with sources, review status and run recipes. The evidence for each use case is re-checked against new publications every month.

Release 2026-10-22-1b7cf027e4f6. Site: https://benchmarks.rewirebio.io/

## Connect your agent

Claude Code, one plugin with the benchmark skill and the knowledge-graph MCP:

    /plugin marketplace add rewire-bio/rewire-benchmarks
    /plugin install bio-model-benchmarks@rewire-benchmarks

Knowledge graph only:

    claude mcp add rewire-benchmark-graph -- uvx --from git+https://github.com/rewire-bio/rdf-kg-mcp@v0.1.0 rdf-kg-mcp serve https://benchmarks.rewirebio.io/agents/kg.tar.gz

Other MCP clients:

    {
      "mcpServers": {
        "rewire-benchmark-graph": {
          "command": "uvx",
          "args": [
            "--from",
            "git+https://github.com/rewire-bio/rdf-kg-mcp@v0.1.0",
            "rdf-kg-mcp",
            "serve",
            "https://benchmarks.rewirebio.io/agents/kg.tar.gz"
          ]
        }
      }
    }

The bundle for this exact release: https://github.com/rewire-bio/rewire-benchmark-data/releases/download/kg/2026-10-22-1b7cf027e4f6/kg-2026-10-22-1b7cf027e4f6.tar.gz

The skill (how to find, run and compare benchmarks with the rewirebench CLI): https://github.com/rewire-bio/rewire-benchmarks/tree/main/skills/bio-model-benchmarks

## Pages

- [Use cases](https://benchmarks.rewirebio.io/use-cases/): questions with the evidence that bears on them
- [Benchmarks](https://benchmarks.rewirebio.io/benchmarks/) and [models](https://benchmarks.rewirebio.io/models/)
- [Evidence and review methods](https://benchmarks.rewirebio.io/evidence/)
- [Downloads](https://benchmarks.rewirebio.io/#downloads): the release as JSONL with checksums
- [Agent setup](https://benchmarks.rewirebio.io/agents/)

## Rules

- Runs happen on your machine. Your model and data are not sent anywhere.
- Nothing is submitted to the database without your explicit consent.
- A source-checked result is a transcription of a published number, not an independent reproduction.