Configuration

NT (GenBench)

NT as fine-tuned in GenBench.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

52 evaluations · 55 results. Different protocols are not a single leaderboard.

Sorted by Accuracy (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Accuracy	Accuracy (task-level value as printed in Table 4)	Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows)	Pearson	MSE	AUROC	AUROC (mean of donor and acceptor as printed)	Pearson (mean of dev and hk as printed)	Spearman
NT (GenBench)Evaluation	GenBench Long-range Promoters Prediction, GenBench Long-range Promoters Prediction	0.989 (best in column)	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Promoter Detection, dataset notata, GenBench Human Promoter Detection, dataset notata	0.978	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Promoter Detection, dataset all, GenBench Human Promoter Detection, dataset all	0.963	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 1, GenBench Mouse Transcription Factor Prediction, dataset 1	0.931	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H4, GenBench Yeast Epigenetic Marks Prediction, dataset H4	0.906	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 2, GenBench Mouse Transcription Factor Prediction, dataset 2	0.888	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3, GenBench Yeast Epigenetic Marks Prediction, dataset H3	0.882	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Promoter Detection, dataset tata, GenBench Human Promoter Detection, dataset tata	0.876	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 4, GenBench Human Transcription Factor Prediction, dataset 4	0.871	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Core Promoter Detection, dataset tata, GenBench Human Core Promoter Detection, dataset tata	0.868	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 3, GenBench Mouse Transcription Factor Prediction, dataset 3	0.867	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 1, GenBench Human Transcription Factor Prediction, dataset 1	0.859	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Core Promoter Detection, dataset notata, GenBench Human Core Promoter Detection, dataset notata	0.851	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Core Promoter Detection, dataset all, GenBench Human Core Promoter Detection, dataset all	0.843	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 0, GenBench Human Transcription Factor Prediction, dataset 0	0.825	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 0, GenBench Mouse Transcription Factor Prediction, dataset 0	0.819	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K79me3, GenBench Yeast Epigenetic Marks Prediction, dataset H3K79me3	0.812	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K36me3, GenBench Yeast Epigenetic Marks Prediction, dataset H3K36me3	0.81	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 2, GenBench Human Transcription Factor Prediction, dataset 2	0.807	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Long-range Species Classification, GenBench Long-range Species Classification	0.786	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K9ac, GenBench Yeast Epigenetic Marks Prediction, dataset H3K9ac	0.774	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K14ac, GenBench Yeast Epigenetic Marks Prediction, dataset H3K14ac	0.771	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me1, GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me1	0.77	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 3, GenBench Human Transcription Factor Prediction, dataset 3	0.769	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 4, GenBench Mouse Transcription Factor Prediction, dataset 4	0.748	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H4ac, GenBench Yeast Epigenetic Marks Prediction, dataset H4ac	0.733	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me3, GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me3	0.712	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me2, GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me2	0.676	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Bulk RNA expression, GenBench Bulk RNA expression	Not reported	Not reported	Not reported	Not reported	0.396	Not reported	Not reported	Not reported	0.783
NT (GenBench)Evaluation	GenBench Drosophila enhancer activity (dev), GenBench Drosophila enhancer activity (dev)	Not reported	Not reported	Not reported	0.612	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Drosophila enhancer activity (hk), GenBench Drosophila enhancer activity (hk)	Not reported	Not reported	Not reported	0.736 (best in column)	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Drosophila enhancer activity (Mean), GenBench Drosophila enhancer activity (Mean)	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	0.674	Not reported
NT (GenBench)Evaluation	GenBench Genomic structure prediction (H1-ESC), GenBench Genomic structure prediction (H1-ESC)	Not reported	Not reported	Not reported	-	-	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Genomic structure prediction (HFF), GenBench Genomic structure prediction (HFF)	Not reported	Not reported	Not reported	-	-	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Long-range splice site prediction (Mean), GenBench Long-range splice site prediction (Mean)	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	0.639	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Long-range splice site prediction (Splice acceptor), GenBench Long-range splice site prediction (Splice acceptor)	Not reported	Not reported	Not reported	Not reported	Not reported	0.722 (best in column)	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Long-range splice site prediction (Splice donar), GenBench Long-range splice site prediction (Splice donar)	Not reported	Not reported	Not reported	Not reported	Not reported	0.557	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Coding vs Intergenomic, GenBench Coding vs Intergenomic	Not reported	0.958	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Core Promoter Detection, GenBench Human Core Promoter Detection	Not reported	Not reported	0.854	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Enhancers Cohn, GenBench Human Enhancers Cohn	Not reported	0.761	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Enhancers Ensembl, GenBench Human Enhancers Ensembl	Not reported	0.924	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Ensembl Regulatory, GenBench Human Ensembl Regulatory	Not reported	0.94	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Nontata Promoters, GenBench Human Nontata Promoters	Not reported	0.929	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human OCR Ensembl, GenBench Human OCR Ensembl	Not reported	0.804	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Promoter Detection, GenBench Human Promoter Detection	Not reported	Not reported	0.939 (best in column)	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Splice Site Detection, GenBench Human Splice Site Detection	Not reported	0.948	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, GenBench Human Transcription Factor Prediction	Not reported	Not reported	0.826	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Human vs Worm, GenBench Human vs Worm	Not reported	0.975 (best in column)	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Mouse Enhancers, GenBench Mouse Enhancers	Not reported	0.851	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, GenBench Mouse Transcription Factor Prediction	Not reported	Not reported	0.85	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Virus Covid Variant Classification, GenBench Virus Covid Variant Classification	Not reported	0.694	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported
NT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, GenBench Yeast Epigenetic Marks Prediction	Not reported	Not reported	0.784	Not reported	Not reported	Not reported	Not reported	Not reported	Not reported

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

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GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Original source · arXiv 2406.01627 version 2

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-genbench-config-nt

areas: dna-genomes
contexts: research
method types: foundation_model
reported name: Nucleotide Transformer
foundation model eligible: true
parameters: 498M parameters (Table 9); fine-tuned 100 epochs, AdamW, cosine decay
access reuse: Public checkpoint
source locator: Table 9; table headers
missing metadata: version: reason: unreported; note: Checkpoint name not printed; parameter count only

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: NT (GenBench)	Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression	0.396 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'Nucleotide Transformer MSE'
Configuration: NT (GenBench)	Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression	0.783 Spearman unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'Nucleotide Transformer Spearman'
Configuration: NT (GenBench)	Protocol: GenBench Drosophila enhancer activity (dev) Dataset: GenBench Drosophila enhancer activity (dev)	0.612 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Drosophila enhancer activity (dev) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-dev Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (dev)', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Drosophila enhancer activity (hk) Dataset: GenBench Drosophila enhancer activity (hk)	0.736 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Drosophila enhancer activity (hk) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-hk Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (hk)', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean)	0.674 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC)	- MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'NT MSE'
Configuration: NT (GenBench)	Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC)	- Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'NT Pearson'
Configuration: NT (GenBench)	Protocol: GenBench Genomic structure prediction (HFF) Dataset: GenBench Genomic structure prediction (HFF)	- MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Genomic structure prediction (HFF) lit-genomics-20261011-genbench-protocol-genome-structure-hff Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (HFF)', column 'NT MSE'
Configuration: NT (GenBench)	Protocol: GenBench Genomic structure prediction (HFF) Dataset: GenBench Genomic structure prediction (HFF)	- Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Genomic structure prediction (HFF) lit-genomics-20261011-genbench-protocol-genome-structure-hff Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (HFF)', column 'NT Pearson'
Configuration: NT (GenBench)	Protocol: GenBench Long-range Promoters Prediction Dataset: GenBench Long-range Promoters Prediction	0.989 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Long-range Promoters Prediction lit-genomics-20261011-genbench-protocol-long-promoters-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 6, row 'Long-range Promoters Prediction', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Long-range Species Classification Dataset: GenBench Long-range Species Classification	0.786 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Long-range Species Classification lit-genomics-20261011-genbench-protocol-long-species-classification Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 6, row 'Long-range Species Classification', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Long-range splice site prediction (Mean) Dataset: GenBench Long-range splice site prediction (Mean)	0.639 AUROC (mean of donor and acceptor as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Long-range splice site prediction (Mean) lit-genomics-20261011-genbench-protocol-long-splice-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 5, row 'Long-range splice site prediction (Mean)', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Long-range splice site prediction (Splice acceptor) Dataset: GenBench Long-range splice site prediction (Splice acceptor)	0.722 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Long-range splice site prediction (Splice acceptor) lit-genomics-20261011-genbench-protocol-long-splice-splice-acceptor Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 5, row 'Long-range splice site prediction (Splice acceptor)', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Long-range splice site prediction (Splice donar) Dataset: GenBench Long-range splice site prediction (Splice donar)	0.557 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Long-range splice site prediction (Splice donar) lit-genomics-20261011-genbench-protocol-long-splice-splice-donar Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 5, row 'Long-range splice site prediction (Splice donar)', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Coding vs Intergenomic Dataset: GenBench Coding vs Intergenomic	0.958 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Coding vs Intergenomic lit-genomics-20261011-genbench-protocol-short-coding-vs-intergenomic Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Coding vs Intergenomic', column 'NT'
Configuration: NT (GenBench)	Protocol: GenBench Human Core Promoter Detection Dataset: GenBench Human Core Promoter Detection	0.854 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Human Core Promoter Detection lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Core Promoter Detection', column 'NT'
Configuration: NT (GenBench)	Protocol: GenBench Human Core Promoter Detection, dataset all Dataset: GenBench Human Core Promoter Detection, dataset all	0.843 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Human Core Promoter Detection, dataset all lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-all Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset all', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Human Core Promoter Detection, dataset notata Dataset: GenBench Human Core Promoter Detection, dataset notata	0.851 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Human Core Promoter Detection, dataset notata lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-notata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset notata', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Human Core Promoter Detection, dataset tata Dataset: GenBench Human Core Promoter Detection, dataset tata	0.868 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Nucleotide Transformer on GenBench Human Core Promoter Detection, dataset tata lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-tata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset tata', column 'Nucleotide Transformer'
Configuration: NT (GenBench)	Protocol: GenBench Human Enhancers Cohn Dataset: GenBench Human Enhancers Cohn	0.761 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Human Enhancers Cohn lit-genomics-20261011-genbench-protocol-short-human-enhancers-cohn Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Enhancers Cohn', column 'NT'
Configuration: NT (GenBench)	Protocol: GenBench Human Enhancers Ensembl Dataset: GenBench Human Enhancers Ensembl	0.924 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Human Enhancers Ensembl lit-genomics-20261011-genbench-protocol-short-human-enhancers-ensembl Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Enhancers Ensembl', column 'NT'
Configuration: NT (GenBench)	Protocol: GenBench Human Ensembl Regulatory Dataset: GenBench Human Ensembl Regulatory	0.94 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Human Ensembl Regulatory lit-genomics-20261011-genbench-protocol-short-human-ensembl-regulatory Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Ensembl Regulatory', column 'NT'
Configuration: NT (GenBench)	Protocol: GenBench Human Nontata Promoters Dataset: GenBench Human Nontata Promoters	0.929 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Human Nontata Promoters lit-genomics-20261011-genbench-protocol-short-human-nontata-promoters Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Nontata Promoters', column 'NT'
Configuration: NT (GenBench)	Protocol: GenBench Human OCR Ensembl Dataset: GenBench Human OCR Ensembl	0.804 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Human OCR Ensembl lit-genomics-20261011-genbench-protocol-short-human-ocr-ensembl Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human OCR Ensembl', column 'NT'
Configuration: NT (GenBench)	Protocol: GenBench Human Promoter Detection Dataset: GenBench Human Promoter Detection	0.939 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source NT on GenBench Human Promoter Detection lit-genomics-20261011-genbench-protocol-short-human-promoter-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Promoter Detection', column 'NT'