GenBench dataset Genomic structure prediction (H1-ESC): regression, sequence length 256M.
6 evaluations · 12 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | 0.0168 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'Caduceus MSE' |
| Configuration: Caduceus (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | 0.502 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'Caduceus Pearson' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | - MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'DNABERT2 MSE' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | - Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'DNABERT2 Pearson' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | - MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'GENA-LM MSE' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | - Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'GENA-LM Pearson' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | 0.0184 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'HyenaDNA MSE' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | 0.436 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'HyenaDNA Pearson' |
| Configuration: NT (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | - MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNT on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'NT MSE' |
| Configuration: NT (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | - Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNT on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'NT Pearson' |
| Configuration: Orca (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | 0.0175 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceOrca on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'Orca MSE' |
| Configuration: Orca (GenBench) | Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC) | 0.454 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceOrca on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'Orca Pearson' |
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5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Population Table 2 row 'Genomic Structure Prediction': Regression; training size 21, testing size 3, length 256M (as printed; task-level sizes) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Genomic Structure Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 2, row 'Genomic Structure Prediction' Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Genomic Structure Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split GenBench train and test split (Table 2) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Genomic Structure Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GenBench dataset Genomic structure prediction (H1-ESC): regression, sequence length 256M. Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Genomic Structure Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GenBench Genomic structure prediction (H1-ESC) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Genomic Structure Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-genbench-data-genome-structure-h1-esc