Configuration

Orca (GenBench)

Orca as fine-tuned in GenBench.

Overview

An explanatory profile has not yet been reviewed for this record.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

2 evaluations · 4 results. Different protocols are not a single leaderboard.

Sorted by MSE (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	MSE	Pearson
Orca (GenBench)Evaluation	GenBench Genomic structure prediction (H1-ESC), GenBench Genomic structure prediction (H1-ESC)	0.0175 (best in column)	0.454 (best in column)
Orca (GenBench)Evaluation	GenBench Genomic structure prediction (HFF), GenBench Genomic structure prediction (HFF)	0.0911	0.435

All 4 result rows with coverage, uncertainty and sources

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Orca (GenBench)	Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC)	0.0175 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Orca on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'Orca MSE'
Configuration: Orca (GenBench)	Protocol: GenBench Genomic structure prediction (H1-ESC) Dataset: GenBench Genomic structure prediction (H1-ESC)	0.454 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Orca on GenBench Genomic structure prediction (H1-ESC) lit-genomics-20261011-genbench-protocol-genome-structure-h1-esc Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (H1-ESC)', column 'Orca Pearson'
Configuration: Orca (GenBench)	Protocol: GenBench Genomic structure prediction (HFF) Dataset: GenBench Genomic structure prediction (HFF)	0.0911 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Orca on GenBench Genomic structure prediction (HFF) lit-genomics-20261011-genbench-protocol-genome-structure-hff Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (HFF)', column 'Orca MSE'
Configuration: Orca (GenBench)	Protocol: GenBench Genomic structure prediction (HFF) Dataset: GenBench Genomic structure prediction (HFF)	0.435 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Orca on GenBench Genomic structure prediction (HFF) lit-genomics-20261011-genbench-protocol-genome-structure-hff Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 7, row 'Genomic structure prediction (HFF)', column 'Orca Pearson'

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Use this configuration

How it works, versions and access

Strengths, limitations and unresolved questions

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

0 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statement	Original source and location	Review and provenance

No evidence rows match these filters. Choose another scope or clear the search.

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release history

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Original source · arXiv 2406.01627 version 2

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-genbench-config-orca

areas: dna-genomes
contexts: research
method types: supervised_machine_learning
reported name: Orca
foundation model eligible: false
parameters: Trained for the task
access reuse: Not stated
source locator: Table 9; table headers
missing metadata: version: reason: unreported; note: Checkpoint name not printed; parameter count only

Related records

configuration of: Orca
system: Orca on GenBench Genomic structure prediction (H1-ESC)
system: Orca on GenBench Genomic structure prediction (HFF)

Suggest a correction