GenBench dataset Human Transcription Factor Prediction, dataset 0: binary classification, sequence length 30.
7 evaluations · 7 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.714 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'Caduceus' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.694 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'CNN' |
| Configuration: DNABERT (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.81 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'DNABERT' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.838 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'DNABERT2' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.832 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'GENA-LM' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.722 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'HyenaDNA' |
| Configuration: NT (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.825 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNucleotide Transformer on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'Nucleotide Transformer' |
Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.
0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.
Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Population Table 2 row 'Human Transcription Factor Prediction': Binary classification; training size 128K, testing size 5K, length 30 (as printed; task-level sizes) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Human Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 2, row 'Human Transcription Factor Prediction' Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Human Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split GenBench train and test split (Table 2) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Human Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GenBench dataset Human Transcription Factor Prediction, dataset 0: binary classification, sequence length 30. Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Human Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GenBench Human Transcription Factor Prediction, dataset 0 Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Human Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-genbench-data-short-human-transcription-factor-prediction-0