Configuration

DNABERT (GenBench)

DNABERT as fine-tuned in GenBench.

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

41 evaluations · 41 results. Different protocols are not a single leaderboard.

Sorted by Accuracy (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Accuracy	Accuracy (task-level value as printed in Table 4)	Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows)
DNABERT (GenBench)Evaluation	GenBench Human Promoter Detection, dataset notata, GenBench Human Promoter Detection, dataset notata	0.921 (best in column)	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Promoter Detection, dataset all, GenBench Human Promoter Detection, dataset all	0.877	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 1, GenBench Mouse Transcription Factor Prediction, dataset 1	0.876	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Core Promoter Detection, dataset tata, GenBench Human Core Promoter Detection, dataset tata	0.867	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H4, GenBench Yeast Epigenetic Marks Prediction, dataset H4	0.855	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Core Promoter Detection, dataset all, GenBench Human Core Promoter Detection, dataset all	0.843	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 1, GenBench Human Transcription Factor Prediction, dataset 1	0.839	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Core Promoter Detection, dataset notata, GenBench Human Core Promoter Detection, dataset notata	0.838	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 2, GenBench Mouse Transcription Factor Prediction, dataset 2	0.827	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3, GenBench Yeast Epigenetic Marks Prediction, dataset H3	0.825	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 4, GenBench Human Transcription Factor Prediction, dataset 4	0.821	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 0, GenBench Human Transcription Factor Prediction, dataset 0	0.81	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K79me3, GenBench Yeast Epigenetic Marks Prediction, dataset H3K79me3	0.777	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 2, GenBench Human Transcription Factor Prediction, dataset 2	0.77	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K36me3, GenBench Yeast Epigenetic Marks Prediction, dataset H3K36me3	0.725	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Promoter Detection, dataset tata, GenBench Human Promoter Detection, dataset tata	0.72	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K9ac, GenBench Yeast Epigenetic Marks Prediction, dataset H3K9ac	0.713	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K14ac, GenBench Yeast Epigenetic Marks Prediction, dataset H3K14ac	0.685	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me1, GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me1	0.684	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, dataset 3, GenBench Human Transcription Factor Prediction, dataset 3	0.68	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 0, GenBench Mouse Transcription Factor Prediction, dataset 0	0.67	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 4, GenBench Mouse Transcription Factor Prediction, dataset 4	0.668	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me2, GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me2	0.666	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H4ac, GenBench Yeast Epigenetic Marks Prediction, dataset H4ac	0.664	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, dataset 3, GenBench Mouse Transcription Factor Prediction, dataset 3	0.654	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me3, GenBench Yeast Epigenetic Marks Prediction, dataset H3K4me3	0.61	Not reported	Not reported
DNABERT (GenBench)Evaluation	GenBench Coding vs Intergenomic, GenBench Coding vs Intergenomic	Not reported	0.936	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Core Promoter Detection, GenBench Human Core Promoter Detection	Not reported	Not reported	0.849 (best in column)
DNABERT (GenBench)Evaluation	GenBench Human Enhancers Cohn, GenBench Human Enhancers Cohn	Not reported	0.702	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Enhancers Ensembl, GenBench Human Enhancers Ensembl	Not reported	0.892	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Ensembl Regulatory, GenBench Human Ensembl Regulatory	Not reported	0.938	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Nontata Promoters, GenBench Human Nontata Promoters	Not reported	0.871	Not reported
DNABERT (GenBench)Evaluation	GenBench Human OCR Ensembl, GenBench Human OCR Ensembl	Not reported	0.75	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Promoter Detection, GenBench Human Promoter Detection	Not reported	Not reported	0.839
DNABERT (GenBench)Evaluation	GenBench Human Splice Site Detection, GenBench Human Splice Site Detection	Not reported	0.872	Not reported
DNABERT (GenBench)Evaluation	GenBench Human Transcription Factor Prediction, GenBench Human Transcription Factor Prediction	Not reported	Not reported	0.784
DNABERT (GenBench)Evaluation	GenBench Human vs Worm, GenBench Human vs Worm	Not reported	0.958 (best in column)	Not reported
DNABERT (GenBench)Evaluation	GenBench Mouse Enhancers, GenBench Mouse Enhancers	Not reported	0.81	Not reported
DNABERT (GenBench)Evaluation	GenBench Mouse Transcription Factor Prediction, GenBench Mouse Transcription Factor Prediction	Not reported	Not reported	0.739
DNABERT (GenBench)Evaluation	GenBench Virus Covid Variant Classification, GenBench Virus Covid Variant Classification	Not reported	0.599	Not reported
DNABERT (GenBench)Evaluation	GenBench Yeast Epigenetic Marks Prediction, GenBench Yeast Epigenetic Marks Prediction	Not reported	Not reported	0.72

All 41 result rows with coverage, uncertainty and sources

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Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: DNABERT (GenBench)	Protocol: GenBench Coding vs Intergenomic Dataset: GenBench Coding vs Intergenomic	0.936 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Coding vs Intergenomic lit-genomics-20261011-genbench-protocol-short-coding-vs-intergenomic Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Coding vs Intergenomic', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Core Promoter Detection Dataset: GenBench Human Core Promoter Detection	0.849 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Core Promoter Detection lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Core Promoter Detection', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Core Promoter Detection, dataset all Dataset: GenBench Human Core Promoter Detection, dataset all	0.843 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Core Promoter Detection, dataset all lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-all Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset all', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Core Promoter Detection, dataset notata Dataset: GenBench Human Core Promoter Detection, dataset notata	0.838 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Core Promoter Detection, dataset notata lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-notata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset notata', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Core Promoter Detection, dataset tata Dataset: GenBench Human Core Promoter Detection, dataset tata	0.867 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Core Promoter Detection, dataset tata lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-tata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset tata', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Enhancers Cohn Dataset: GenBench Human Enhancers Cohn	0.702 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Enhancers Cohn lit-genomics-20261011-genbench-protocol-short-human-enhancers-cohn Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Enhancers Cohn', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Enhancers Ensembl Dataset: GenBench Human Enhancers Ensembl	0.892 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Enhancers Ensembl lit-genomics-20261011-genbench-protocol-short-human-enhancers-ensembl Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Enhancers Ensembl', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Ensembl Regulatory Dataset: GenBench Human Ensembl Regulatory	0.938 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Ensembl Regulatory lit-genomics-20261011-genbench-protocol-short-human-ensembl-regulatory Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Ensembl Regulatory', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Nontata Promoters Dataset: GenBench Human Nontata Promoters	0.871 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Nontata Promoters lit-genomics-20261011-genbench-protocol-short-human-nontata-promoters Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Nontata Promoters', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human OCR Ensembl Dataset: GenBench Human OCR Ensembl	0.75 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human OCR Ensembl lit-genomics-20261011-genbench-protocol-short-human-ocr-ensembl Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human OCR Ensembl', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Promoter Detection Dataset: GenBench Human Promoter Detection	0.839 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Promoter Detection lit-genomics-20261011-genbench-protocol-short-human-promoter-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Promoter Detection', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Promoter Detection, dataset all Dataset: GenBench Human Promoter Detection, dataset all	0.877 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Promoter Detection, dataset all lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-all Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset all', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Promoter Detection, dataset notata Dataset: GenBench Human Promoter Detection, dataset notata	0.921 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Promoter Detection, dataset notata lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-notata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset notata', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Promoter Detection, dataset tata Dataset: GenBench Human Promoter Detection, dataset tata	0.72 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Promoter Detection, dataset tata lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Splice Site Detection Dataset: GenBench Human Splice Site Detection	0.872 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Splice Site Detection lit-genomics-20261011-genbench-protocol-short-human-splice-site-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Splice Site Detection', column 'DNABERT'; also Table 10
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Transcription Factor Prediction Dataset: GenBench Human Transcription Factor Prediction	0.784 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Transcription Factor Prediction lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Transcription Factor Prediction', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0	0.81 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Transcription Factor Prediction, dataset 1 Dataset: GenBench Human Transcription Factor Prediction, dataset 1	0.839 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Transcription Factor Prediction, dataset 1 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-1 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 1', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Transcription Factor Prediction, dataset 2 Dataset: GenBench Human Transcription Factor Prediction, dataset 2	0.77 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Transcription Factor Prediction, dataset 2 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-2 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 2', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Transcription Factor Prediction, dataset 3 Dataset: GenBench Human Transcription Factor Prediction, dataset 3	0.68 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 3', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human Transcription Factor Prediction, dataset 4 Dataset: GenBench Human Transcription Factor Prediction, dataset 4	0.821 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human Transcription Factor Prediction, dataset 4 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-4 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 4', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Human vs Worm Dataset: GenBench Human vs Worm	0.958 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Human vs Worm lit-genomics-20261011-genbench-protocol-short-human-vs-worm Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human vs Worm', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Mouse Enhancers Dataset: GenBench Mouse Enhancers	0.81 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Mouse Enhancers lit-genomics-20261011-genbench-protocol-short-mouse-enhancers Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Mouse Enhancers', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Mouse Transcription Factor Prediction Dataset: GenBench Mouse Transcription Factor Prediction	0.739 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Mouse Transcription Factor Prediction lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Mouse Transcription Factor Prediction', column 'DNABERT'
Configuration: DNABERT (GenBench)	Protocol: GenBench Mouse Transcription Factor Prediction, dataset 0 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 0	0.67 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source DNABERT on GenBench Mouse Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 0', column 'DNABERT'

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GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Original source · arXiv 2406.01627 version 2

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-genbench-config-dnabert

areas: dna-genomes
contexts: research
method types: foundation_model
reported name: DNABERT
foundation model eligible: true
parameters: 86.1M parameters (Table 9); fine-tuned 100 epochs, AdamW, cosine decay
access reuse: Public checkpoint
source locator: Table 9; table headers
missing metadata: version: reason: unreported; note: Checkpoint name not printed; parameter count only

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