rewirebio.iobenchmarks
Dataset

GenBench Human Promoter Detection, dataset tata

GenBench dataset Human Promoter Detection, dataset tata: binary classification, sequence length 70.

Evaluation results

7 evaluations · 7 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Caduceus (GenBench)Protocol: GenBench Human Promoter Detection, dataset tata
Dataset: GenBench Human Promoter Detection, dataset tata
0.585 Accuracy
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Caduceus on GenBench Human Promoter Detection, dataset tata

lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata

Aggregation: Not reported

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'Caduceus'
Configuration: CNN (GenBench)Protocol: GenBench Human Promoter Detection, dataset tata
Dataset: GenBench Human Promoter Detection, dataset tata
0.586 Accuracy
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

CNN on GenBench Human Promoter Detection, dataset tata

lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata

Aggregation: Not reported

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'CNN'
Configuration: DNABERT (GenBench)Protocol: GenBench Human Promoter Detection, dataset tata
Dataset: GenBench Human Promoter Detection, dataset tata
0.72 Accuracy
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT on GenBench Human Promoter Detection, dataset tata

lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata

Aggregation: Not reported

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'DNABERT'
Configuration: DNABERT2 (GenBench)Protocol: GenBench Human Promoter Detection, dataset tata
Dataset: GenBench Human Promoter Detection, dataset tata
0.806 Accuracy
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

DNABERT2 on GenBench Human Promoter Detection, dataset tata

lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata

Aggregation: Not reported

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'DNABERT2'
Configuration: GENA-LM (GenBench)Protocol: GenBench Human Promoter Detection, dataset tata
Dataset: GenBench Human Promoter Detection, dataset tata
0.81 Accuracy
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

GENA-LM on GenBench Human Promoter Detection, dataset tata

lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata

Aggregation: Not reported

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'GENA-LM'
Configuration: HyenaDNA (GenBench)Protocol: GenBench Human Promoter Detection, dataset tata
Dataset: GenBench Human Promoter Detection, dataset tata
0.604 Accuracy
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

HyenaDNA on GenBench Human Promoter Detection, dataset tata

lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata

Aggregation: Not reported

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'HyenaDNA'
Configuration: NT (GenBench)Protocol: GenBench Human Promoter Detection, dataset tata
Dataset: GenBench Human Promoter Detection, dataset tata
0.876 Accuracy
fraction · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Nucleotide Transformer on GenBench Human Promoter Detection, dataset tata

lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata

Aggregation: Not reported

GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'Nucleotide Transformer'

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

5 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Population
Table 2 row 'Human Promoter Detection': Binary classification; training size 95K, testing size 12K, length 70 (as printed; task-level sizes)
Context-only references
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

Original source ↗

Table 2, row 'Human Promoter Detection'

Version: arXiv 2406.01627 version 2
Retrieved: 2026-10-11T01:42:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.population

Source artifact SHA-256: 24105d26b25a6adf7509334b041d44e145d5006dfedf87e812e12138fa154f12

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Source location
Table 2, row 'Human Promoter Detection'
Context-only references
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

Original source ↗

Table 2, row 'Human Promoter Detection'

Version: arXiv 2406.01627 version 2
Retrieved: 2026-10-11T01:42:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 24105d26b25a6adf7509334b041d44e145d5006dfedf87e812e12138fa154f12

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Split
GenBench train and test split (Table 2)
Context-only references
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

Original source ↗

Table 2, row 'Human Promoter Detection'

Version: arXiv 2406.01627 version 2
Retrieved: 2026-10-11T01:42:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: 24105d26b25a6adf7509334b041d44e145d5006dfedf87e812e12138fa154f12

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
GenBench dataset Human Promoter Detection, dataset tata: binary classification, sequence length 70.
Context-only references
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

Original source ↗

Table 2, row 'Human Promoter Detection'

Version: arXiv 2406.01627 version 2
Retrieved: 2026-10-11T01:42:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 24105d26b25a6adf7509334b041d44e145d5006dfedf87e812e12138fa154f12

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Name
GenBench Human Promoter Detection, dataset tata
Context-only references
GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models

Original source ↗

Table 2, row 'Human Promoter Detection'

Version: arXiv 2406.01627 version 2
Retrieved: 2026-10-11T01:42:08Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 24105d26b25a6adf7509334b041d44e145d5006dfedf87e812e12138fa154f12

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-genbench-data-short-human-promoter-detection-tata

areas
dna-genomes
contexts
research
population
Table 2 row 'Human Promoter Detection': Binary classification; training size 95K, testing size 12K, length 70 (as printed; task-level sizes)
split
GenBench train and test split (Table 2)
source locator
Table 2, row 'Human Promoter Detection'
missing metadata
version: reason: unreported
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