Overview
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Evaluations and results
41 evaluations · 41 results. Different protocols are not a single leaderboard.
Sorted by Accuracy (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
All 41 result rows with coverage, uncertainty and sources
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: CNN (GenBench) | Protocol: GenBench Coding vs Intergenomic Dataset: GenBench Coding vs Intergenomic | 0.884 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Coding vs Intergenomic lit-genomics-20261011-genbench-protocol-short-coding-vs-intergenomic Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Coding vs Intergenomic', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Core Promoter Detection Dataset: GenBench Human Core Promoter Detection | 0.8 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Core Promoter Detection lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Core Promoter Detection', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Core Promoter Detection, dataset all Dataset: GenBench Human Core Promoter Detection, dataset all | 0.788 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Core Promoter Detection, dataset all lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-all Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset all', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Core Promoter Detection, dataset notata Dataset: GenBench Human Core Promoter Detection, dataset notata | 0.799 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Core Promoter Detection, dataset notata lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-notata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset notata', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Core Promoter Detection, dataset tata Dataset: GenBench Human Core Promoter Detection, dataset tata | 0.813 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Core Promoter Detection, dataset tata lit-genomics-20261011-genbench-protocol-short-human-core-promoter-detection-tata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Core Promoter Detection, dataset tata', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Enhancers Cohn Dataset: GenBench Human Enhancers Cohn | 0.708 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Enhancers Cohn lit-genomics-20261011-genbench-protocol-short-human-enhancers-cohn Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Enhancers Cohn', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Enhancers Ensembl Dataset: GenBench Human Enhancers Ensembl | 0.764 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Enhancers Ensembl lit-genomics-20261011-genbench-protocol-short-human-enhancers-ensembl Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Enhancers Ensembl', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Ensembl Regulatory Dataset: GenBench Human Ensembl Regulatory | 0.862 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Ensembl Regulatory lit-genomics-20261011-genbench-protocol-short-human-ensembl-regulatory Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Ensembl Regulatory', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Nontata Promoters Dataset: GenBench Human Nontata Promoters | 0.856 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Nontata Promoters lit-genomics-20261011-genbench-protocol-short-human-nontata-promoters Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Nontata Promoters', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human OCR Ensembl Dataset: GenBench Human OCR Ensembl | 0.695 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human OCR Ensembl lit-genomics-20261011-genbench-protocol-short-human-ocr-ensembl Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human OCR Ensembl', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Promoter Detection Dataset: GenBench Human Promoter Detection | 0.688 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Promoter Detection lit-genomics-20261011-genbench-protocol-short-human-promoter-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Promoter Detection', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Promoter Detection, dataset all Dataset: GenBench Human Promoter Detection, dataset all | 0.73 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Promoter Detection, dataset all lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-all Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset all', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Promoter Detection, dataset notata Dataset: GenBench Human Promoter Detection, dataset notata | 0.747 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Promoter Detection, dataset notata lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-notata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset notata', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Promoter Detection, dataset tata Dataset: GenBench Human Promoter Detection, dataset tata | 0.586 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Promoter Detection, dataset tata lit-genomics-20261011-genbench-protocol-short-human-promoter-detection-tata Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Promoter Detection, dataset tata', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Splice Site Detection Dataset: GenBench Human Splice Site Detection | 0.567 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Splice Site Detection lit-genomics-20261011-genbench-protocol-short-human-splice-site-detection Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Splice Site Detection', column 'CNN'; also Table 10 |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Transcription Factor Prediction Dataset: GenBench Human Transcription Factor Prediction | 0.667 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Transcription Factor Prediction lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human Transcription Factor Prediction', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 0 Dataset: GenBench Human Transcription Factor Prediction, dataset 0 | 0.694 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 0', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 1 Dataset: GenBench Human Transcription Factor Prediction, dataset 1 | 0.722 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Transcription Factor Prediction, dataset 1 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-1 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 1', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 2 Dataset: GenBench Human Transcription Factor Prediction, dataset 2 | 0.631 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Transcription Factor Prediction, dataset 2 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-2 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 2', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 3 Dataset: GenBench Human Transcription Factor Prediction, dataset 3 | 0.608 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 3', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human Transcription Factor Prediction, dataset 4 Dataset: GenBench Human Transcription Factor Prediction, dataset 4 | 0.681 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Human Transcription Factor Prediction, dataset 4 lit-genomics-20261011-genbench-protocol-short-human-transcription-factor-prediction-4 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Human Transcription Factor Prediction, dataset 4', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Human vs Worm Dataset: GenBench Human vs Worm | 0.941 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcelit-genomics-20261011-genbench-protocol-short-human-vs-worm Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Human vs Worm', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Mouse Enhancers Dataset: GenBench Mouse Enhancers | 0.701 Accuracy (task-level value as printed in Table 4) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Mouse Enhancers lit-genomics-20261011-genbench-protocol-short-mouse-enhancers Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Mouse Enhancers', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction Dataset: GenBench Mouse Transcription Factor Prediction | 0.608 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Mouse Transcription Factor Prediction lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Mouse Transcription Factor Prediction', column 'CNN' |
| Configuration: CNN (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 0 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 0 | 0.547 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Mouse Transcription Factor Prediction, dataset 0 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-0 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 0', column 'CNN' |
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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
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- GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Original source · arXiv 2406.01627 version 2
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