GenBench dataset Yeast Epigenetic Marks Prediction: binary classification, sequence length 128.
7 evaluations · 7 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction Dataset: GenBench Yeast Epigenetic Marks Prediction | 0.638 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Yeast Epigenetic Marks Prediction lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Yeast Epigenetic Marks Prediction', column 'Caduceus' |
| Configuration: CNN (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction Dataset: GenBench Yeast Epigenetic Marks Prediction | 0.607 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Yeast Epigenetic Marks Prediction lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Yeast Epigenetic Marks Prediction', column 'CNN' |
| Configuration: DNABERT (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction Dataset: GenBench Yeast Epigenetic Marks Prediction | 0.72 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT on GenBench Yeast Epigenetic Marks Prediction lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Yeast Epigenetic Marks Prediction', column 'DNABERT' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction Dataset: GenBench Yeast Epigenetic Marks Prediction | 0.802 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Yeast Epigenetic Marks Prediction lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Yeast Epigenetic Marks Prediction', column 'DNABERT2' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction Dataset: GenBench Yeast Epigenetic Marks Prediction | 0.783 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Yeast Epigenetic Marks Prediction lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Yeast Epigenetic Marks Prediction', column 'GENA-LM' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction Dataset: GenBench Yeast Epigenetic Marks Prediction | 0.63 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Yeast Epigenetic Marks Prediction lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Yeast Epigenetic Marks Prediction', column 'HyenaDNA' |
| Configuration: NT (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction Dataset: GenBench Yeast Epigenetic Marks Prediction | 0.784 Accuracy (task-level value as printed in Table 4; mean of the Table 10 dataset rows) fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNT on GenBench Yeast Epigenetic Marks Prediction lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 4, row 'Yeast Epigenetic Marks Prediction', column 'NT' |
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5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Population Table 2 row 'Yeast Epigenetic Marks Prediction': Binary classification; training size 230K, testing size 29K, length 128 (as printed; task-level sizes) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 2, row 'Yeast Epigenetic Marks Prediction' Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split GenBench train and test split (Table 2) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GenBench dataset Yeast Epigenetic Marks Prediction: binary classification, sequence length 128. Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GenBench Yeast Epigenetic Marks Prediction Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-genbench-data-short-yeast-epigenetic-marks-prediction