GenBench dataset Yeast Epigenetic Marks Prediction, dataset H3: binary classification, sequence length 128.
7 evaluations · 7 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction, dataset H3 Dataset: GenBench Yeast Epigenetic Marks Prediction, dataset H3 | 0.715 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Yeast Epigenetic Marks Prediction, dataset H3 lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction-h3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Yeast Epigenetic Marks Prediction, dataset H3', column 'Caduceus' |
| Configuration: CNN (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction, dataset H3 Dataset: GenBench Yeast Epigenetic Marks Prediction, dataset H3 | 0.654 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Yeast Epigenetic Marks Prediction, dataset H3 lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction-h3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Yeast Epigenetic Marks Prediction, dataset H3', column 'CNN' |
| Configuration: DNABERT (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction, dataset H3 Dataset: GenBench Yeast Epigenetic Marks Prediction, dataset H3 | 0.825 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT on GenBench Yeast Epigenetic Marks Prediction, dataset H3 lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction-h3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Yeast Epigenetic Marks Prediction, dataset H3', column 'DNABERT' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction, dataset H3 Dataset: GenBench Yeast Epigenetic Marks Prediction, dataset H3 | 0.897 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Yeast Epigenetic Marks Prediction, dataset H3 lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction-h3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Yeast Epigenetic Marks Prediction, dataset H3', column 'DNABERT2' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction, dataset H3 Dataset: GenBench Yeast Epigenetic Marks Prediction, dataset H3 | 0.889 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Yeast Epigenetic Marks Prediction, dataset H3 lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction-h3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Yeast Epigenetic Marks Prediction, dataset H3', column 'GENA-LM' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction, dataset H3 Dataset: GenBench Yeast Epigenetic Marks Prediction, dataset H3 | 0.685 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Yeast Epigenetic Marks Prediction, dataset H3 lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction-h3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Yeast Epigenetic Marks Prediction, dataset H3', column 'HyenaDNA' |
| Configuration: NT (GenBench) | Protocol: GenBench Yeast Epigenetic Marks Prediction, dataset H3 Dataset: GenBench Yeast Epigenetic Marks Prediction, dataset H3 | 0.882 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNucleotide Transformer on GenBench Yeast Epigenetic Marks Prediction, dataset H3 lit-genomics-20261011-genbench-protocol-short-yeast-epigenetic-marks-prediction-h3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Yeast Epigenetic Marks Prediction, dataset H3', column 'Nucleotide Transformer' |
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5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Population Table 2 row 'Yeast Epigenetic Marks Prediction': Binary classification; training size 230K, testing size 29K, length 128 (as printed; task-level sizes) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 2, row 'Yeast Epigenetic Marks Prediction' Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split GenBench train and test split (Table 2) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GenBench dataset Yeast Epigenetic Marks Prediction, dataset H3: binary classification, sequence length 128. Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GenBench Yeast Epigenetic Marks Prediction, dataset H3 Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Yeast Epigenetic Marks Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-genbench-data-short-yeast-epigenetic-marks-prediction-h3