GenBench dataset Mouse Transcription Factor Prediction, dataset 3: binary classification, sequence length 30.
7 evaluations · 7 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 3 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 3 | 0.579 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Mouse Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 3', column 'Caduceus' |
| Configuration: CNN (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 3 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 3 | 0.567 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCNN on GenBench Mouse Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 3', column 'CNN' |
| Configuration: DNABERT (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 3 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 3 | 0.654 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT on GenBench Mouse Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 3', column 'DNABERT' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 3 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 3 | 0.842 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Mouse Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 3', column 'DNABERT2' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 3 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 3 | 0.829 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Mouse Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 3', column 'GENA-LM' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 3 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 3 | 0.621 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Mouse Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 3', column 'HyenaDNA' |
| Configuration: NT (GenBench) | Protocol: GenBench Mouse Transcription Factor Prediction, dataset 3 Dataset: GenBench Mouse Transcription Factor Prediction, dataset 3 | 0.867 Accuracy fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNucleotide Transformer on GenBench Mouse Transcription Factor Prediction, dataset 3 lit-genomics-20261011-genbench-protocol-short-mouse-transcription-factor-prediction-3 Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 10, row 'Mouse Transcription Factor Prediction, dataset 3', column 'Nucleotide Transformer' |
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5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Population Table 2 row 'Mouse Transcription Factor Prediction': Binary classification; training size 80K, testing size 10K, length 30 (as printed; task-level sizes) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Mouse Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 2, row 'Mouse Transcription Factor Prediction' Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Mouse Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split GenBench train and test split (Table 2) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Mouse Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GenBench dataset Mouse Transcription Factor Prediction, dataset 3: binary classification, sequence length 30. Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Mouse Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GenBench Mouse Transcription Factor Prediction, dataset 3 Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Mouse Transcription Factor Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-genbench-data-short-mouse-transcription-factor-prediction-3