GenBench dataset Drosophila enhancer activity (Mean): regression, sequence length 128.
6 evaluations · 6 results. Different protocols are not a single leaderboard.
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus (GenBench) | Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean) | 0.486 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'Caduceus' |
| Configuration: DeepSTARR (GenBench) | Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean) | 0.468 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepSTARR on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'DeepSTARR' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean) | 0.678 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'DNABERT2' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean) | 0.682 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'GENA-LM' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean) | 0.511 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'HyenaDNA' |
| Configuration: NT (GenBench) | Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean) | 0.674 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNucleotide Transformer on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'Nucleotide Transformer' |
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5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Population Table 2 row 'Drosophila Enhancers Prediction': Regression; training size 402K, testing size 41K, length 128 (as printed; task-level sizes) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Drosophila Enhancers Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 2, row 'Drosophila Enhancers Prediction' Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Drosophila Enhancers Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split GenBench train and test split (Table 2) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Drosophila Enhancers Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GenBench dataset Drosophila enhancer activity (Mean): regression, sequence length 128. Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Drosophila Enhancers Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GenBench Drosophila enhancer activity (Mean) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Drosophila Enhancers Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-genbench-data-drosophila-enhancer-activity-mean