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Evaluations and results
3 evaluations · 3 results. Different protocols are not a single leaderboard.
Sorted by Pearson (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Protocol and dataset | Pearson | Pearson (mean of dev and hk as printed) |
|---|---|---|---|
| DeepSTARR (GenBench)Evaluation | GenBench Drosophila enhancer activity (hk), GenBench Drosophila enhancer activity (hk) | 0.513 (best in column) | Not reported |
| DeepSTARR (GenBench)Evaluation | GenBench Drosophila enhancer activity (dev), GenBench Drosophila enhancer activity (dev) | 0.424 | Not reported |
| DeepSTARR (GenBench)Evaluation | GenBench Drosophila enhancer activity (Mean), GenBench Drosophila enhancer activity (Mean) | Not reported | 0.468 |
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DeepSTARR (GenBench) | Protocol: GenBench Drosophila enhancer activity (dev) Dataset: GenBench Drosophila enhancer activity (dev) | 0.424 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepSTARR on GenBench Drosophila enhancer activity (dev) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-dev Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (dev)', column 'DeepSTARR' |
| Configuration: DeepSTARR (GenBench) | Protocol: GenBench Drosophila enhancer activity (hk) Dataset: GenBench Drosophila enhancer activity (hk) | 0.513 Pearson unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepSTARR on GenBench Drosophila enhancer activity (hk) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-hk Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (hk)', column 'DeepSTARR' |
| Configuration: DeepSTARR (GenBench) | Protocol: GenBench Drosophila enhancer activity (Mean) Dataset: GenBench Drosophila enhancer activity (Mean) | 0.468 Pearson (mean of dev and hk as printed) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepSTARR on GenBench Drosophila enhancer activity (Mean) lit-genomics-20261011-genbench-protocol-drosophila-enhancer-activity-mean Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 3, row 'Drosophila enhancer activity (Mean)', column 'DeepSTARR' |
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Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
1 source record and release history
- GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Original source · arXiv 2406.01627 version 2
Technical metadata and extraction receipts
Stable ID: lit-genomics-20261011-genbench-config-deepstarr
- areas
- dna-genomes
- contexts
- research
- method types
- supervised_machine_learning
- reported name
- DeepSTARR
- foundation model eligible
- false
- parameters
- Trained for the task
- access reuse
- Not stated
- source locator
- Table 9; table headers
- missing metadata
- version: reason: unreported; note: Checkpoint name not printed; parameter count only