GenBench dataset Bulk RNA expression: regression, sequence length 196K.
5 evaluations · 10 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Caduceus (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.51 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'Caduceus MSE' |
| Configuration: Caduceus (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.746 Spearman unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'Caduceus Spearman' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.451 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'DNABERT2 MSE' |
| Configuration: DNABERT2 (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.767 Spearman unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT2 on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'DNABERT2 Spearman' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.496 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'GENA-LM MSE' |
| Configuration: GENA-LM (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.748 Spearman unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'GENA-LM Spearman' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.453 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'HyenaDNA MSE' |
| Configuration: HyenaDNA (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.755 Spearman unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceHyenaDNA on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'HyenaDNA Spearman' |
| Configuration: NT (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.396 MSE unitless · lower Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNucleotide Transformer on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'Nucleotide Transformer MSE' |
| Configuration: NT (GenBench) | Protocol: GenBench Bulk RNA expression Dataset: GenBench Bulk RNA expression | 0.783 Spearman unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNucleotide Transformer on GenBench Bulk RNA expression lit-genomics-20261011-genbench-protocol-bulk-rna-expression Aggregation: Not reported GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models · Table 8, row 'Bulk RNA expression', column 'Nucleotide Transformer Spearman' |
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5 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Population Table 2 row 'Bulk RNA Prediction': Regression; training size 23K, testing size 990, length 196K (as printed; task-level sizes) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Bulk RNA Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Source location Table 2, row 'Bulk RNA Prediction' Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Bulk RNA Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split GenBench train and test split (Table 2) Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Bulk RNA Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description GenBench dataset Bulk RNA expression: regression, sequence length 196K. Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Bulk RNA Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GenBench Bulk RNA expression Context-only references | GenBench: A Benchmarking Suite for Systematic Evaluation of Genomic Foundation Models Table 2, row 'Bulk RNA Prediction' Version: arXiv 2406.01627 version 2 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-genbench-data-bulk-rna-expression