Configuration

PIDC

Entry in BEELINE, identified only by its entry label; the model or method behind it is not identified.

Overview

An explanatory profile has not yet been reviewed for this record.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

44 evaluations · 44 results. Different protocols are not a single leaderboard.

Sorted by Early precision ratio (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Early precision ratio
PIDCEvaluation	BEELINE 2020 Figure 5 · MHSC-GM · STRING network, TFs+1000 genes, MHSC-GM	8.37 (best in column)
PIDCEvaluation	BEELINE 2020 Figure 5 · MHSC-GM · STRING network, TFs+500 genes, MHSC-GM	8.36
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-E · STRING network, TFs+1000 genes, mHSC-E	8.08
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-E · STRING network, TFs+500 genes, mHSC-E	7.49
PIDCEvaluation	BEELINE 2020 Figure 5 · MHSC-GM · Non-specific ChIP-Seq network, TFs+500 genes, MHSC-GM	6.64
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-L · STRING network, TFs+1000 genes, mHSC-L	6.45
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-L · STRING network, TFs+500 genes, mHSC-L	6.22
PIDCEvaluation	BEELINE 2020 Figure 5 · MHSC-GM · Non-specific ChIP-Seq network, TFs+1000 genes, MHSC-GM	5.85
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-E · Non-specific ChIP-Seq network, TFs+1000 genes, mHSC-E	5.74
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-E · Non-specific ChIP-Seq network, TFs+500 genes, mHSC-E	5.41
PIDCEvaluation	BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes, hESC	4.12
PIDCEvaluation	BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes, hESC	3.75
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · STRING network, TFs+1000 genes, mESC	3.67
PIDCEvaluation	BEELINE 2020 Figure 5 · hHep · STRING network, TFs+1000 genes, hHep	3.63
PIDCEvaluation	BEELINE 2020 Figure 5 · hHep · STRING network, TFs+500 genes, hHep	3.5
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · STRING network, TFs+500 genes, mESC	3.18
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-L · Non-specific ChIP-Seq network, TFs+1000 genes, mHSC-L	2.97
PIDCEvaluation	BEELINE 2020 Figure 5 · mDC · Non-specific ChIP-Seq network, TFs+1000 genes, mDC	2.95
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-L · Non-specific ChIP-Seq network, TFs+500 genes, mHSC-L	2.85
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · Non-specific ChIP-Seq network, TFs+1000 genes, mESC	2.8
PIDCEvaluation	BEELINE 2020 Figure 5 · mDC · Non-specific ChIP-Seq network, TFs+500 genes, mDC	2.73
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · Non-specific ChIP-Seq network, TFs+500 genes, mESC	2.53
PIDCEvaluation	BEELINE 2020 Figure 5 · hHep · Non-specific ChIP-Seq network, TFs+500 genes, hHep	2.48
PIDCEvaluation	BEELINE 2020 Figure 5 · hHep · Non-specific ChIP-Seq network, TFs+1000 genes, hHep	2.44
PIDCEvaluation	BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes, hESC	2.11
PIDCEvaluation	BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes, hESC	1.9
PIDCEvaluation	BEELINE 2020 Figure 5 · mDC · STRING network, TFs+500 genes, mDC	1.88
PIDCEvaluation	BEELINE 2020 Figure 5 · mDC · STRING network, TFs+1000 genes, mDC	1.87
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · log/gof network, TFs+500 genes, mESC	1.32
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · log/gof network, TFs+1000 genes, mESC	1.31
PIDCEvaluation	BEELINE 2020 Figure 5 · mDC · Cell-type specific ChIP-Seq network, TFs+500 genes, mDC	1.13
PIDCEvaluation	BEELINE 2020 Figure 5 · mDC · Cell-type specific ChIP-Seq network, TFs+1000 genes, mDC	1.1
PIDCEvaluation	BEELINE 2020 Figure 5 · hHep · Cell-type specific ChIP-Seq network, TFs+500 genes, hHep	1.03
PIDCEvaluation	BEELINE 2020 Figure 5 · hHep · Cell-type specific ChIP-Seq network, TFs+1000 genes, hHep	1.01
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · Cell-type specific ChIP-Seq network, TFs+1000 genes, mESC	1.01
PIDCEvaluation	BEELINE 2020 Figure 5 · mESC · Cell-type specific ChIP-Seq network, TFs+500 genes, mESC	1
PIDCEvaluation	BEELINE 2020 Figure 5 · MHSC-GM · Cell-type specific ChIP-Seq network, TFs+1000 genes, MHSC-GM	0.99
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-E · Cell-type specific ChIP-Seq network, TFs+500 genes, mHSC-E	0.98
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-L · Cell-type specific ChIP-Seq network, TFs+500 genes, mHSC-L	0.98
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-L · Cell-type specific ChIP-Seq network, TFs+1000 genes, mHSC-L	0.98
PIDCEvaluation	BEELINE 2020 Figure 5 · MHSC-GM · Cell-type specific ChIP-Seq network, TFs+500 genes, MHSC-GM	0.97
PIDCEvaluation	BEELINE 2020 Figure 5 · mHSC-E · Cell-type specific ChIP-Seq network, TFs+1000 genes, mHSC-E	0.97
PIDCEvaluation	BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes, hESC	0.92
PIDCEvaluation	BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes, hESC	0.91

All 44 result rows with coverage, uncertainty and sources

Filter evaluations

Tested model or methodProtocolDatasetEvaluation setupMetricEvidence origin

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · MHSC-GM · Cell-type specific ChIP-Seq network, TFs+500 genes Dataset subset: MHSC-GM	0.97 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · MHSC-GM BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 16, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mHSC-E · Non-specific ChIP-Seq network, TFs+1000 genes Dataset subset: mHSC-E	5.74 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mHSC-E BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 9, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · hHep · STRING network, TFs+1000 genes Dataset subset: hHep	3.63 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · hHep BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 21, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mESC · Non-specific ChIP-Seq network, TFs+1000 genes Dataset subset: mESC	2.8 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 12, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes Dataset subset: hESC	4.12 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · hESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mHSC-L · Non-specific ChIP-Seq network, TFs+500 genes Dataset subset: mHSC-L	2.85 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mESC · log/gof network, TFs+500 genes Dataset subset: mESC	1.32 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mDC · Cell-type specific ChIP-Seq network, TFs+500 genes Dataset subset: mDC	1.13 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mDC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 18, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mHSC-E · Cell-type specific ChIP-Seq network, TFs+500 genes Dataset subset: mHSC-E	0.98 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mHSC-E BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 14, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mESC · Cell-type specific ChIP-Seq network, TFs+500 genes Dataset subset: mESC	1 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 17, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · MHSC-GM · STRING network, TFs+500 genes Dataset subset: MHSC-GM	8.36 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · MHSC-GM BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 6, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mDC · Non-specific ChIP-Seq network, TFs+500 genes Dataset subset: mDC	2.73 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mDC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 13, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mESC · STRING network, TFs+500 genes Dataset subset: mESC	3.18 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mDC · STRING network, TFs+500 genes Dataset subset: mDC	1.88 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mDC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 8, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mHSC-E · Non-specific ChIP-Seq network, TFs+500 genes Dataset subset: mHSC-E	5.41 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mHSC-E BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 9, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · hHep · Non-specific ChIP-Seq network, TFs+1000 genes Dataset subset: hHep	2.44 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · hHep BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 23, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · hHep · STRING network, TFs+500 genes Dataset subset: hHep	3.5 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · hHep BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 21, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes Dataset subset: hESC	0.91 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · hESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mDC · Non-specific ChIP-Seq network, TFs+1000 genes Dataset subset: mDC	2.95 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mDC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 13, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mHSC-E · STRING network, TFs+1000 genes Dataset subset: mHSC-E	8.08 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mHSC-E BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 4, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mESC · log/gof network, TFs+1000 genes Dataset subset: mESC	1.31 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · hHep · Non-specific ChIP-Seq network, TFs+500 genes Dataset subset: hHep	2.48 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · hHep BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 23, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes Dataset subset: hESC	2.11 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · hESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 15
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · mHSC-L · STRING network, TFs+500 genes Dataset subset: mHSC-L	6.22 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 6
Configuration: PIDC	Protocol: BEELINE 2020 Figure 5 · MHSC-GM · Non-specific ChIP-Seq network, TFs+500 genes Dataset subset: MHSC-GM	6.64 Early precision ratio unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source PIDC · BEELINE 2020 Figure 5 · MHSC-GM BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 11, column 6

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

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Evidence

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Evidence table

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release history

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Original source · 10.1038/s41592-019-0690-6 source data published 2020

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Technical metadata and extraction receipts

Stable ID: acquired-configuration-7546e674ee9631067fdc

source locator: Figure 5 source CSV row 4, column 6
reported configuration: PIDC
missing metadata: checkpoint revision: reason: unreported; model family: reason: unextracted
provenance note: Exact source-reported configuration or submission label. Family membership, checkpoint identity and aliases have not been inferred.

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