rewirebio.iobenchmarks
Dataset subset

hESC

Source-defined subset: hESC. Exact membership and scoring coverage remain as reported in the cited artifact.

Evaluation results

36 evaluations · 36 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: PPCORProtocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
1.23 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PPCOR · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 10
Configuration: SINCERITIESProtocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes
Dataset subset: hESC
0.68 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SINCERITIES · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 20
Configuration: SCODEProtocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
1.02 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SCODE · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 9
Configuration: GRNBOOST2Protocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes
Dataset subset: hESC
1.56 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GRNBOOST2 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 17
Configuration: PIDCProtocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes
Dataset subset: hESC
4.12 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PIDC · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 15
Configuration: PPCORProtocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
1.06 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PPCOR · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 10
Configuration: SCODEProtocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes
Dataset subset: hESC
1.41 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SCODE · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 9
Configuration: GRNBOOST2Protocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes
Dataset subset: hESC
0.93 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GRNBOOST2 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 17
Configuration: GENIE3Protocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
1.8 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENIE3 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 7
Configuration: SINCERITIESProtocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes
Dataset subset: hESC
1.69 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SINCERITIES · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 20
Configuration: PPCORProtocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes
Dataset subset: hESC
1.28 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PPCOR · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 19
Configuration: SINCERITIESProtocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
0 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SINCERITIES · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 11
Configuration: SCODEProtocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes
Dataset subset: hESC
1.47 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SCODE · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 18
Configuration: PPCORProtocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes
Dataset subset: hESC
1.38 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PPCOR · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 19
Configuration: GRNBOOST2Protocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes
Dataset subset: hESC
3.08 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GRNBOOST2 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 8
Configuration: SCODEProtocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
1.02 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SCODE · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 9
Configuration: PIDCProtocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
0.91 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PIDC · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 6
Configuration: GENIE3Protocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
0.95 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENIE3 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 7
Configuration: GRNBOOST2Protocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes
Dataset subset: hESC
3.45 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GRNBOOST2 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 17
Configuration: SINCERITIESProtocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
0 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SINCERITIES · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 11
Configuration: GENIE3Protocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes
Dataset subset: hESC
3.66 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GENIE3 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 16
Configuration: PIDCProtocol: BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes
Dataset subset: hESC
2.11 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PIDC · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 22, column 15
Configuration: GRNBOOST2Protocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes
Dataset subset: hESC
0.93 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

GRNBOOST2 · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 8
Configuration: SCODEProtocol: BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes
Dataset subset: hESC
1.06 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

SCODE · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 20, column 18
Configuration: PPCORProtocol: BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes
Dataset subset: hESC
1.14 Early precision ratio
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

PPCOR · BEELINE 2020 Figure 5 · hESC

BEELINE 2020 Figure 5

Aggregation: unreported

BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 24, column 19

Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

3 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Source location
Figure 5 source CSV row 20, column 6
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 5 source CSV row 20, column 6

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: 1f6a38649aa1fc1d90522e3d09f85f7e5714cc80c585ef679ed7603d7a1c7b70

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

Description
Source-defined subset: hESC. Exact membership and scoring coverage remain as reported in the cited artifact.
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 5 source CSV row 20, column 6

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: 1f6a38649aa1fc1d90522e3d09f85f7e5714cc80c585ef679ed7603d7a1c7b70

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

Name
hESC
Context-only references
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

Original source ↗

Figure 5 source CSV row 20, column 6

Version: 10.1038/s41592-019-0690-6 source data published 2020
Retrieved: 2026-09-19

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: 1f6a38649aa1fc1d90522e3d09f85f7e5714cc80c585ef679ed7603d7a1c7b70

Hash scope: Exact downloaded bytes, before optional gzip storage

Inspected artifact

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: discovered

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: acquired-dataset-65ec1a2e5ff66c7e38c6

source locator
Figure 5 source CSV row 20, column 6
missing metadata
split manifest: reason: unextracted
Related records

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