BEELINE: 10.1038/s41592-019-0690-6 source data published 2020

What this source contributed

Records in this release that cite this source. A record can cite several sources.

• 6 configurations
• 44 protocols
• 7 dataset subsets
• 264 evaluations
• 264 results
• 220 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Claims

Statements this source supports, each with where in the source it was checked.

• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes: description: Description Source-specific evaluation. Input conditions: Cell-type specific ChIP-Seq network, TFs+500 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 24, column 6)
• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes: name: Name BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes (Figure 5 source CSV row 24, column 6)
• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes: panel[0].caveats[0]: Comparison panels[0]: caveats[0] Source-specific evaluation. Input conditions: Cell-type specific ChIP-Seq network, TFs+500 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 24, column 6)
• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes: panel[0].title: Comparison panels[0]: title BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+500 genes: Early Precision Ratio (Figure 5 source CSV row 24, column 6)
• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes: description: Description Source-specific evaluation. Input conditions: Cell-type specific ChIP-Seq network, TFs+1000 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 24, column 15)
• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes: name: Name BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes (Figure 5 source CSV row 24, column 15)
• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes: panel[0].caveats[0]: Comparison panels[0]: caveats[0] Source-specific evaluation. Input conditions: Cell-type specific ChIP-Seq network, TFs+1000 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 24, column 15)
• BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes: panel[0].title: Comparison panels[0]: title BEELINE 2020 Figure 5 · hESC · Cell-type specific ChIP-Seq network, TFs+1000 genes: Early Precision Ratio (Figure 5 source CSV row 24, column 15)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes: description: Description Source-specific evaluation. Input conditions: Non-specific ChIP-Seq network, TFs+500 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 22, column 6)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes: name: Name BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes (Figure 5 source CSV row 22, column 6)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes: panel[0].caveats[0]: Comparison panels[0]: caveats[0] Source-specific evaluation. Input conditions: Non-specific ChIP-Seq network, TFs+500 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 22, column 6)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes: panel[0].title: Comparison panels[0]: title BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+500 genes: Early Precision Ratio (Figure 5 source CSV row 22, column 6)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes: description: Description Source-specific evaluation. Input conditions: Non-specific ChIP-Seq network, TFs+1000 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 22, column 15)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes: name: Name BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes (Figure 5 source CSV row 22, column 15)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes: panel[0].caveats[0]: Comparison panels[0]: caveats[0] Source-specific evaluation. Input conditions: Non-specific ChIP-Seq network, TFs+1000 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 22, column 15)
• BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes: panel[0].title: Comparison panels[0]: title BEELINE 2020 Figure 5 · hESC · Non-specific ChIP-Seq network, TFs+1000 genes: Early Precision Ratio (Figure 5 source CSV row 22, column 15)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes: description: Description Source-specific evaluation. Input conditions: STRING network, TFs+500 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 20, column 6)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes: name: Name BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes (Figure 5 source CSV row 20, column 6)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes: panel[0].caveats[0]: Comparison panels[0]: caveats[0] Source-specific evaluation. Input conditions: STRING network, TFs+500 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 20, column 6)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes: panel[0].title: Comparison panels[0]: title BEELINE 2020 Figure 5 · hESC · STRING network, TFs+500 genes: Early Precision Ratio (Figure 5 source CSV row 20, column 6)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes: description: Description Source-specific evaluation. Input conditions: STRING network, TFs+1000 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 20, column 15)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes: name: Name BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes (Figure 5 source CSV row 20, column 15)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes: panel[0].caveats[0]: Comparison panels[0]: caveats[0] Source-specific evaluation. Input conditions: STRING network, TFs+1000 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 20, column 15)
• BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes: panel[0].title: Comparison panels[0]: title BEELINE 2020 Figure 5 · hESC · STRING network, TFs+1000 genes: Early Precision Ratio (Figure 5 source CSV row 20, column 15)
• BEELINE 2020 Figure 5 · hHep · Cell-type specific ChIP-Seq network, TFs+500 genes: description: Description Source-specific evaluation. Input conditions: Cell-type specific ChIP-Seq network, TFs+500 genes. No equivalence to other releases, protocols or model families is inferred. (Figure 5 source CSV row 25, column 6)

Models, benchmarks and other records

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.