| Configuration: SINCERITIES | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mESC | 1.49 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSINCERITIES · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 12, column 20 |
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| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mESC | 1.71 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 9 |
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| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mESC | 1.91 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 12, column 9 |
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| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mESC | 2.8 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 12, column 15 |
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| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+500 Dataset subset: mESC | 1.26 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 8 |
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| Configuration: SINCERITIES | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mESC | 1.09 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSINCERITIES · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 17, column 11 |
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| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mESC | 1.01 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 17, column 9 |
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| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+1000 Dataset subset: mESC | 1.28 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 17 |
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| Configuration: PPCOR | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mESC | 0.88 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePPCOR · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 10 |
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| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mESC | 3.28 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 12, column 7 |
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| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+500 Dataset subset: mESC | 1.32 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 6 |
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| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+500 Dataset subset: mESC | 1.3 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 9 |
|---|
| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mESC | 1 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 17, column 6 |
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| Configuration: PPCOR | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mESC | 1.02 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePPCOR · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 17, column 10 |
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| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mESC | 3.16 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 7 |
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| Configuration: SINCERITIES | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+500 Dataset subset: mESC | 0.84 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSINCERITIES · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 11 |
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| Configuration: PPCOR | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: STRING; Gene selection: TFs+1000 Dataset subset: mESC | 1.11 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePPCOR · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 19 |
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| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mESC | 3.18 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 6 |
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| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+1000 Dataset subset: mESC | 1.2 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 18 |
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| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mESC | 1.05 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 17, column 17 |
|---|
| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mESC | 3.51 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 12, column 17 |
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| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mESC | 3.35 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 8 |
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| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+1000 Dataset subset: mESC | 1.33 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 16 |
|---|
| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: log/gof; Gene selection: TFs+1000 Dataset subset: mESC | 1.31 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 19, column 15 |
|---|
| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mESC · Reference network: STRING; Gene selection: TFs+1000 Dataset subset: mESC | 3.67 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mESC BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 7, column 17 |
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