| Configuration: SINCERITIES | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+1000 Dataset subset: mHSC-L | 1.43 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSINCERITIES · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 20 |
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| Configuration: PPCOR | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 0.73 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePPCOR · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 19 |
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| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mHSC-L | 2.85 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 6 |
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| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 1 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 17 |
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| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 3.05 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 16 |
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| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+1000 Dataset subset: mHSC-L | 7.17 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 16 |
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| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 1.03 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 16 |
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| Configuration: SINCERITIES | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 1.67 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSINCERITIES · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 20 |
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| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mHSC-L | 1.02 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 8 |
|---|
| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+1000 Dataset subset: mHSC-L | 7.17 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 17 |
|---|
| Configuration: SINCERITIES | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mHSC-L | 1.5 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSINCERITIES · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 11 |
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| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+1000 Dataset subset: mHSC-L | 2.15 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 18 |
|---|
| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 1.03 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 18 |
|---|
| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mHSC-L | 2.7 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 8 |
|---|
| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Non-specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 1.38 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 10, column 18 |
|---|
| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mHSC-L | 6.22 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 6 |
|---|
| Configuration: PPCOR | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 1 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePPCOR · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 19 |
|---|
| Configuration: GRNBOOST2 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mHSC-L | 6.67 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGRNBOOST2 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 8 |
|---|
| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mHSC-L | 0.98 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 6 |
|---|
| Configuration: PPCOR | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mHSC-L | 0.99 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePPCOR · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 10 |
|---|
| Configuration: PIDC | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+1000 Dataset subset: mHSC-L | 6.45 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePIDC · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 15 |
|---|
| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+500 Dataset subset: mHSC-L | 1.05 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 7 |
|---|
| Configuration: SINCERITIES | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000 Dataset subset: mHSC-L | 0 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSINCERITIES · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 20 |
|---|
| Configuration: GENIE3 | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mHSC-L | 6.83 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGENIE3 · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 7 |
|---|
| Configuration: SCODE | Protocol: BEELINE 2020 Figure 5 · mHSC-L · Reference network: STRING; Gene selection: TFs+500 Dataset subset: mHSC-L | 2.12 Early Precision Ratio ratio · higher Uncertainty: status: unreported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceSCODE · BEELINE 2020 Figure 5 · mHSC-L BEELINE 2020 Figure 5 Aggregation: unreported BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 5, column 9 |
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