BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000
Source-specific evaluation. Input conditions: Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000. No equivalence to other releases, protocols or model families is inferred.
Overview
Source-specific evaluation. Input conditions: Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000. No equivalence to other releases, protocols or model families is inferred.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000: Early Precision Ratio
Early Precision Ratio (ratio) · Higher values are better.
BEELINE 2020 Figure 5 · mHSC-L · Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000 · mHSC-L
Evidence origin: Author-reported evaluation.
BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Figure 5 source CSV row 15, column 15 through Figure 5 source CSV row 15, column 20- Missing source cells and quarantined conflicts are recorded in acquisition and audit tables. Per-result scoring denominators may be unreported.
Comparison details and limitations
Complete selected source table is retained across source-order panels. These point estimates do not establish statistical significance or a universal ranking.
- Source-specific evaluation. Input conditions: Reference network: Cell-type specific ChIP-Seq; Gene selection: TFs+1000. No equivalence to other releases, protocols or model families is inferred.
- Exact source-defined evaluation scope; reported scores are not rewire reproductions.
Automated source review: 2026-09-19. Numerical source review does not establish independent reproduction.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Showing 6 of 6 matching rows.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
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Benchmarks
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Recorded evaluations
Each evaluation records what was tested and under which conditions.
Baseline coverage
Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.
0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.
No execution recipe linked to this protocol. Recipe availability does not establish a completed evaluation.
No reviewed evaluations with results linked in this release.
Literature evidence is not a Rewire measurement. Executed but unpublished runs and private review status are not included.
Null control
Proposed control: requires review
Seeded random network with matched node universe and density
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Conventional reference
Proposed control: requires review
Upstream statistical network inference reference
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-29-06401fd5b220. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-beeline Individual claims | BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 Figure 5 source CSV row 15, column 15 Version: 10.1038/s41592-019-0690-6 source data published 2020 | source checked ai assisted source review · 2026-09-19 Audit detailsField: Claim: acquired-membership-fbf35d5682e054423594 Source artifact SHA-256: Hash scope: Exact downloaded bytes, before optional gzip storage |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: discovered
1 source records and release history
- BEELINE: 10.1038/s41592-019-0690-6 source data published 2020 · Original source · 10.1038/s41592-019-0690-6 source data published 2020
Technical metadata and extraction receipts
Stable ID: acquired-protocol-d60261afa2c58e4aa12e
- source locator
- Figure 5 source CSV row 15, column 15
- procedure
- BEELINE 2020 Figure 5
- comparison panels
- id: acquired-figure-a98543b18766eec70a47; title: BEELINE 2020 Figure 5 · mHSC-L · {"reference_network":"Cell-type specific ChIP-Seq","gene_selection":"TFs+1000"}: Early Precision Ratio; protocol id: acquired-protocol-d60261afa2c58e4aa12e; dataset id: acquired-dataset-28bfd0c743b860070fc3; metric: Early Precision Ratio; unit: ratio; direction: higher; result ids: acquired-result-c8e44c97bac612b37f6b; acquired-result-375c67e52ab467e22141; acquired-result-21f27edce93aeb85fcda; acquired-result-6db20d5b56f1566fb405; acquired-result-95066e276ae684a36b27; acquired-result-b5afe69b61cc0288bfd6; source ids: acquired-source-31344fb7e5e8ae6b9666; source locator: Figure 5 source CSV row 15, column 15 through Figure 5 source CSV row 15, column 20; context: Complete selected source table is retained across source-order panels. These point estimates do not establish statistical significance or a universal ranking.; caveats: Source-specific evaluation. Input conditions: {"reference_network":"Cell-type specific ChIP-Seq","gene_selection":"TFs+1000"}. No equivalence to other releases, protocols or model families is inferred.; Exact source-defined evaluation scope; reported scores are not rewire reproductions.; Missing source cells and quarantined conflicts are recorded in acquisition and audit tables. Per-result scoring denominators may be unreported.; review: method: automated_source_review; date: 2026-09-19
- scope limitations
- Exact source-defined evaluation scope; reported scores are not rewire reproductions.
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- subject: BEELINE 2020 Figure 5: benchmark membership