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Configuration

EsViritu v1.3.1, headline setting (Tisza et al. 2026)

EsViritu v1.3.1 at the authors' headline parameter setting, querying the EsViritu Virus Pathogen Database.

3 evaluations · 21 results

Overview

An explanatory profile has not yet been reviewed for this record.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

3 evaluations · 21 results. Different protocols are not a single leaderboard.

Sorted by Bray curtis dissimilarity (RPM-based abundance profile; mean over mock communities; ANI-capped truth) (lower is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configurationProtocol and datasetBray curtis dissimilarity (RPM-based abundance profile; mean over mock communities; ANI-capped truth)Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank family, strict truth)Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank genus, strict truth)Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank species, strict truth)Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank subspecies, strict truth)F1 (taxon detection; mean over mock communities; ANI-capped truth)F1 (taxon detection; mean over six mock communities; rank family, strict truth)F1 (taxon detection; mean over six mock communities; rank genus, strict truth)F1 (taxon detection; mean over six mock communities; rank species, strict truth)F1 (taxon detection; mean over six mock communities; rank subspecies, strict truth)False positive rate (percentage of individual reads falsely assigned; mean over seven negative-control libraries)False positive rate (percentage of individual reads falsely assigned; median over seven negative-control libraries)False positives (false species reported; maximum over seven negative-control libraries)False positives (false species reported; median over seven negative-control libraries)Pearson (abundance profile against truth; mean over mock communities; ANI-capped truth)Pearson (abundance profile against truth; mean over six mock communities; rank family, strict truth)Pearson (abundance profile against truth; mean over six mock communities; rank genus, strict truth)Pearson (abundance profile against truth; mean over six mock communities; rank species, strict truth)Pearson (abundance profile against truth; mean over six mock communities; rank subspecies, strict truth)Recall (model-estimated family-level detection probability at 10 read pairs; marginal mean over seven positive-control genomes)Recall (model-estimated family-level detection probability at 100 read pairs; marginal mean over seven positive-control genomes)
EsViritu v1.3.1, headline setting (Tisza et al. 2026)EvaluationMutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9), Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)0.2410.2670.270.2750.3820.9220.9480.9290.8450.671Not reportedNot reportedNot reportedNot reported0.8250.8310.8170.7760.564Not reportedNot reported
EsViritu v1.3.1, headline setting (Tisza et al. 2026)EvaluationFalse positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6), Seven pathogen-free negative-control read libraries (Tisza et al. 2026)Not reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reported2.07e-7%0%10Not reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reported
EsViritu v1.3.1, headline setting (Tisza et al. 2026)EvaluationPositive-control virus detection by read depth (Tisza et al. 2026 Table S2), Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026)Not reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reportedNot reported0.9740.999
All 21 result rows with coverage, uncertainty and sources
Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.241 Bray curtis dissimilarity (RPM-based abundance profile; mean over mock communities; ANI-capped truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 25 (base_tool 'EsViritu', rank 'ani_capped', truth_mode 'capped'), column 'bray_curtis' (cell E25)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.922 F1 (taxon detection; mean over mock communities; ANI-capped truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 25 (base_tool 'EsViritu', rank 'ani_capped', truth_mode 'capped'), column 'F1' (cell D25)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.825 Pearson (abundance profile against truth; mean over mock communities; ANI-capped truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 25 (base_tool 'EsViritu', rank 'ani_capped', truth_mode 'capped'), column 'pearson' (cell F25)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.267 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank family, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 5 (base_tool 'EsViritu', rank 'family', truth_mode 'strict'), column 'bray_curtis' (cell E5)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.948 F1 (taxon detection; mean over six mock communities; rank family, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 5 (base_tool 'EsViritu', rank 'family', truth_mode 'strict'), column 'F1' (cell D5)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.831 Pearson (abundance profile against truth; mean over six mock communities; rank family, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 5 (base_tool 'EsViritu', rank 'family', truth_mode 'strict'), column 'pearson' (cell F5)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.27 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank genus, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 10 (base_tool 'EsViritu', rank 'genus', truth_mode 'strict'), column 'bray_curtis' (cell E10)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.929 F1 (taxon detection; mean over six mock communities; rank genus, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 10 (base_tool 'EsViritu', rank 'genus', truth_mode 'strict'), column 'F1' (cell D10)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.817 Pearson (abundance profile against truth; mean over six mock communities; rank genus, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 10 (base_tool 'EsViritu', rank 'genus', truth_mode 'strict'), column 'pearson' (cell F10)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.275 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank species, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 15 (base_tool 'EsViritu', rank 'species', truth_mode 'strict'), column 'bray_curtis' (cell E15)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.845 F1 (taxon detection; mean over six mock communities; rank species, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 15 (base_tool 'EsViritu', rank 'species', truth_mode 'strict'), column 'F1' (cell D15)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.776 Pearson (abundance profile against truth; mean over six mock communities; rank species, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 15 (base_tool 'EsViritu', rank 'species', truth_mode 'strict'), column 'pearson' (cell F15)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.382 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank subspecies, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 20 (base_tool 'EsViritu', rank 'subspecies', truth_mode 'strict'), column 'bray_curtis' (cell E20)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.671 F1 (taxon detection; mean over six mock communities; rank subspecies, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 20 (base_tool 'EsViritu', rank 'subspecies', truth_mode 'strict'), column 'F1' (cell D20)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.564 Pearson (abundance profile against truth; mean over six mock communities; rank subspecies, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 20 (base_tool 'EsViritu', rank 'subspecies', truth_mode 'strict'), column 'pearson' (cell F20)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)
Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026)
1 False positives (false species reported; maximum over seven negative-control libraries)
count · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)

rna-pathogen-20261011-tisza2026-protocol-neg

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 4 (base_tool 'EsViritu'), column 'max_n_species' (cell F4)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)
Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026)
2.07e-7% False positive rate (percentage of individual reads falsely assigned; mean over seven negative-control libraries)
percent · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)

rna-pathogen-20261011-tisza2026-protocol-neg

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 4 (base_tool 'EsViritu'), column 'mean_fp_pct' (cell D4)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)
Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026)
0% False positive rate (percentage of individual reads falsely assigned; median over seven negative-control libraries)
percent · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)

rna-pathogen-20261011-tisza2026-protocol-neg

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 4 (base_tool 'EsViritu'), column 'median_fp_pct' (cell C4)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)
Dataset: Seven pathogen-free negative-control read libraries (Tisza et al. 2026)
0 False positives (false species reported; median over seven negative-control libraries)
count · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on False positives in seven pathogen-free libraries (Tisza et al. 2026 Table S6)

rna-pathogen-20261011-tisza2026-protocol-neg

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S6, row 4 (base_tool 'EsViritu'), column 'median_n_species' (cell E4)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Positive-control virus detection by read depth (Tisza et al. 2026 Table S2)
Dataset: Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026)
0.974 Recall (model-estimated family-level detection probability at 10 read pairs; marginal mean over seven positive-control genomes)
fraction · higher

Uncertainty: 95% CI 0.9472888410150351 to 0.9877770210442621. Asymptotic interval from brglm2 estimated marginal means; standard error printed 0.009555569960517363

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Positive-control virus detection by read depth (Tisza et al. 2026 Table S2)

rna-pathogen-20261011-tisza2026-protocol-pos

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S2, row 4 (base_tool 'EsViritu', read_pairs 10), column 'prob' (cell C4); interval columns 'asymp.LCL' and 'asymp.UCL'
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Positive-control virus detection by read depth (Tisza et al. 2026 Table S2)
Dataset: Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026)
0.999 Recall (model-estimated family-level detection probability at 100 read pairs; marginal mean over seven positive-control genomes)
fraction · higher

Uncertainty: 95% CI 0.9958883308387158 to 0.9997762702050332. Asymptotic interval from brglm2 estimated marginal means; standard error printed 0.0007134219297489364

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Positive-control virus detection by read depth (Tisza et al. 2026 Table S2)

rna-pathogen-20261011-tisza2026-protocol-pos

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S2, row 9 (base_tool 'EsViritu', read_pairs 100), column 'prob' (cell C9); interval columns 'asymp.LCL' and 'asymp.UCL'

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Stable ID: rna-pathogen-20261011-tisza2026-config-esviritu

areas
microbes-communities
contexts
research
method types
conventional_pipeline
reported name
EsViritu v1.3.1
version
1.3.1
foundation model eligible
false
parameters
sr mode (minimap2 short-read preset); database: EsViritu Virus Pathogen Database v3.2.4b (v3.2.4 with taxonomy labels taken only from the NCBI TaxDump of 2026-06-01), built into each tool's own index format
source locator
Methods 'Tools and parameters'; Results 'EsViritu reaches read-level sensitivity while avoiding false positives' paragraph 3 (Headline setting 'EsViritu=sr')
access reuse
EsViritu: Bioconda and GitHub cmmr/EsViritu; Virus Pathogen Database on Zenodo (10.5281/zenodo.17716199; v3.2.4b in 10.5281/zenodo.23043160)
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