Published developer benchmark; transcribed, not reproduced.
1 evaluation · 2 results. Different protocols are not a single leaderboard.
Protocol: Positive-control virus detection by read depth (Tisza et al. 2026 Table S2) · Dataset: Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026)
Sorted by Recall (model-estimated family-level detection probability at 10 read pairs; marginal mean over seven positive-control genomes) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | Recall (model-estimated family-level detection probability at 10 read pairs; marginal mean over seven positive-control genomes) | Recall (model-estimated family-level detection probability at 100 read pairs; marginal mean over seven positive-control genomes) |
|---|---|---|
| EsViritu v1.3.1, headline setting (Tisza et al. 2026)Evaluation | 0.974 | 0.999 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026) | Protocol: Positive-control virus detection by read depth (Tisza et al. 2026 Table S2) Dataset: Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026) | 0.974 Recall (model-estimated family-level detection probability at 10 read pairs; marginal mean over seven positive-control genomes) fraction · higher Uncertainty: 95% CI 0.9472888410150351 to 0.9877770210442621. Asymptotic interval from brglm2 estimated marginal means; standard error printed 0.009555569960517363 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEsViritu v1.3.1 on Positive-control virus detection by read depth (Tisza et al. 2026 Table S2) rna-pathogen-20261011-tisza2026-protocol-pos Aggregation: Not reported Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S2, row 4 (base_tool 'EsViritu', read_pairs 10), column 'prob' (cell C4); interval columns 'asymp.LCL' and 'asymp.UCL' |
| Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026) | Protocol: Positive-control virus detection by read depth (Tisza et al. 2026 Table S2) Dataset: Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026) | 0.999 Recall (model-estimated family-level detection probability at 100 read pairs; marginal mean over seven positive-control genomes) fraction · higher Uncertainty: 95% CI 0.9958883308387158 to 0.9997762702050332. Asymptotic interval from brglm2 estimated marginal means; standard error printed 0.0007134219297489364 Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceEsViritu v1.3.1 on Positive-control virus detection by read depth (Tisza et al. 2026 Table S2) rna-pathogen-20261011-tisza2026-protocol-pos Aggregation: Not reported Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S2, row 9 (base_tool 'EsViritu', read_pairs 100), column 'prob' (cell C9); interval columns 'asymp.LCL' and 'asymp.UCL' |
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Positive-control virus detection by read depth (Tisza et al. 2026 Table S2)
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38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Headline setting: sr mode (minimap2 short-read preset) Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: adaptation Headline setting: sr mode (minimap2 short-read preset) Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Marginal mean over seven genomes at fixed depth Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: aggregation Marginal mean over seven genomes at fixed depth Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: budget Not reported Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026) Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: dataset version Positive-control synthetic reads from seven divergent virus genomes (Tisza et al. 2026) Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Synthetic read pairs (bbtools randomreads.sh) Context-only references | EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Comparison: inputs Synthetic read pairs (bbtools randomreads.sh) Context-only references | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S2, rows base_tool 'EsViritu' Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: rna-pathogen-20261011-tisza2026-eval-pos-esviritu