rewirebio.iobenchmarks
Dataset

Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)

Benchmark data constructed by the EsViritu authors.

Evaluation results

5 evaluations · 75 results. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.846 Bray curtis dissimilarity (RPM-based abundance profile; mean over mock communities; ANI-capped truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 24 (base_tool 'Centrifuger', rank 'ani_capped', truth_mode 'capped'), column 'bray_curtis' (cell E24)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.247 F1 (taxon detection; mean over mock communities; ANI-capped truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 24 (base_tool 'Centrifuger', rank 'ani_capped', truth_mode 'capped'), column 'F1' (cell D24)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
-0.105 Pearson (abundance profile against truth; mean over mock communities; ANI-capped truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 24 (base_tool 'Centrifuger', rank 'ani_capped', truth_mode 'capped'), column 'pearson' (cell F24)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.615 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank family, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 4 (base_tool 'Centrifuger', rank 'family', truth_mode 'strict'), column 'bray_curtis' (cell E4)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.727 F1 (taxon detection; mean over six mock communities; rank family, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 4 (base_tool 'Centrifuger', rank 'family', truth_mode 'strict'), column 'F1' (cell D4)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.321 Pearson (abundance profile against truth; mean over six mock communities; rank family, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 4 (base_tool 'Centrifuger', rank 'family', truth_mode 'strict'), column 'pearson' (cell F4)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.626 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank genus, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 9 (base_tool 'Centrifuger', rank 'genus', truth_mode 'strict'), column 'bray_curtis' (cell E9)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.648 F1 (taxon detection; mean over six mock communities; rank genus, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 9 (base_tool 'Centrifuger', rank 'genus', truth_mode 'strict'), column 'F1' (cell D9)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.321 Pearson (abundance profile against truth; mean over six mock communities; rank genus, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 9 (base_tool 'Centrifuger', rank 'genus', truth_mode 'strict'), column 'pearson' (cell F9)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.639 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank species, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 14 (base_tool 'Centrifuger', rank 'species', truth_mode 'strict'), column 'bray_curtis' (cell E14)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.579 F1 (taxon detection; mean over six mock communities; rank species, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 14 (base_tool 'Centrifuger', rank 'species', truth_mode 'strict'), column 'F1' (cell D14)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.304 Pearson (abundance profile against truth; mean over six mock communities; rank species, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 14 (base_tool 'Centrifuger', rank 'species', truth_mode 'strict'), column 'pearson' (cell F14)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.584 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank subspecies, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 19 (base_tool 'Centrifuger', rank 'subspecies', truth_mode 'strict'), column 'bray_curtis' (cell E19)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.613 F1 (taxon detection; mean over six mock communities; rank subspecies, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 19 (base_tool 'Centrifuger', rank 'subspecies', truth_mode 'strict'), column 'F1' (cell D19)
Configuration: Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.335 Pearson (abundance profile against truth; mean over six mock communities; rank subspecies, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 19 (base_tool 'Centrifuger', rank 'subspecies', truth_mode 'strict'), column 'pearson' (cell F19)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.241 Bray curtis dissimilarity (RPM-based abundance profile; mean over mock communities; ANI-capped truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 25 (base_tool 'EsViritu', rank 'ani_capped', truth_mode 'capped'), column 'bray_curtis' (cell E25)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.922 F1 (taxon detection; mean over mock communities; ANI-capped truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 25 (base_tool 'EsViritu', rank 'ani_capped', truth_mode 'capped'), column 'F1' (cell D25)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.825 Pearson (abundance profile against truth; mean over mock communities; ANI-capped truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 25 (base_tool 'EsViritu', rank 'ani_capped', truth_mode 'capped'), column 'pearson' (cell F25)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.267 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank family, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 5 (base_tool 'EsViritu', rank 'family', truth_mode 'strict'), column 'bray_curtis' (cell E5)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.948 F1 (taxon detection; mean over six mock communities; rank family, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 5 (base_tool 'EsViritu', rank 'family', truth_mode 'strict'), column 'F1' (cell D5)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.831 Pearson (abundance profile against truth; mean over six mock communities; rank family, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 5 (base_tool 'EsViritu', rank 'family', truth_mode 'strict'), column 'pearson' (cell F5)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.27 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank genus, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 10 (base_tool 'EsViritu', rank 'genus', truth_mode 'strict'), column 'bray_curtis' (cell E10)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.929 F1 (taxon detection; mean over six mock communities; rank genus, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 10 (base_tool 'EsViritu', rank 'genus', truth_mode 'strict'), column 'F1' (cell D10)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.817 Pearson (abundance profile against truth; mean over six mock communities; rank genus, strict truth)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 10 (base_tool 'EsViritu', rank 'genus', truth_mode 'strict'), column 'pearson' (cell F10)
Configuration: EsViritu v1.3.1, headline setting (Tisza et al. 2026)Protocol: Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
Dataset: Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
0.275 Bray curtis dissimilarity (RPM-based abundance profile; mean over six mock communities; rank species, strict truth)
unitless · lower

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Author-reported evaluation · Source checked
Methods, coverage and source

EsViritu v1.3.1 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)

rna-pathogen-20261011-tisza2026-protocol-mock

Aggregation: Not reported

Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 15 (base_tool 'EsViritu', rank 'species', truth_mode 'strict'), column 'bray_curtis' (cell E15)

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Dataset and evaluation context

A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

7 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Access
Zenodo 10.5281/zenodo.23043160 (stated in Code and data availability; not retrieved)
Context-only references
EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes

Original source ↗

Methods 'Mock communities'

Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Retrieved: 2026-10-11T21:39:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.access

Source artifact SHA-256: fd92099655ddefdec31d35e273b80c4b233eed395c1cfc137eaddaa4efee232b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Population
Three communities of 90 random Virus Pathogen Database genomes and three of 60 genomes with at most one per family, mutated to 80%, 85%, 90%, 95%, 98% and 100% ANI; 10,000 InSilicoSeq NovaSeq read pairs per virus plus 50,000,000 reads from 100 bacterial genomes and the human genome
Context-only references
EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes

Original source ↗

Methods 'Mock communities'

Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Retrieved: 2026-10-11T21:39:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.population

Source artifact SHA-256: fd92099655ddefdec31d35e273b80c4b233eed395c1cfc137eaddaa4efee232b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Source location
Methods 'Mock communities'
Context-only references
EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes

Original source ↗

Methods 'Mock communities'

Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Retrieved: 2026-10-11T21:39:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.source_locator

Source artifact SHA-256: fd92099655ddefdec31d35e273b80c4b233eed395c1cfc137eaddaa4efee232b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Split
No split
Context-only references
EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes

Original source ↗

Methods 'Mock communities'

Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Retrieved: 2026-10-11T21:39:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.split

Source artifact SHA-256: fd92099655ddefdec31d35e273b80c4b233eed395c1cfc137eaddaa4efee232b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Version
As described in Tisza et al. 2026 v1
Context-only references
EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes

Original source ↗

Methods 'Mock communities'

Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Retrieved: 2026-10-11T21:39:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: fd92099655ddefdec31d35e273b80c4b233eed395c1cfc137eaddaa4efee232b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Description
Benchmark data constructed by the EsViritu authors.
Context-only references
EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes

Original source ↗

Methods 'Mock communities'

Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Retrieved: 2026-10-11T21:39:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: fd92099655ddefdec31d35e273b80c4b233eed395c1cfc137eaddaa4efee232b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Name
Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
Context-only references
EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes

Original source ↗

Methods 'Mock communities'

Version: bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Retrieved: 2026-10-11T21:39:50Z

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: fd92099655ddefdec31d35e273b80c4b233eed395c1cfc137eaddaa4efee232b

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: rna-pathogen-20261011-tisza2026-data-mock

areas
microbes-communities
contexts
research
version
As described in Tisza et al. 2026 v1
population
Three communities of 90 random Virus Pathogen Database genomes and three of 60 genomes with at most one per family, mutated to 80%, 85%, 90%, 95%, 98% and 100% ANI; 10,000 InSilicoSeq NovaSeq read pairs per virus plus 50,000,000 reads from 100 bacterial genomes and the human genome
split
No split
source locator
Methods 'Mock communities'
access
Zenodo 10.5281/zenodo.23043160 (stated in Code and data availability; not retrieved)
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