Pearson (abundance profile against truth; mean over mock communities; ANI-capped truth) of Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026) on Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
-0.105 Pearson (abundance profile against truth; mean over mock communities; ANI-capped truth)
Methods
- Tested configuration
- Centrifuger v1.1.1-r309, headline setting (Tisza et al. 2026)
- Protocol
- Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
- Dataset
- Six mutated virus mock communities with bacterial and human background (Tisza et al. 2026)
- Procedure
- Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
- Evaluation
- Centrifuger v1.1.1-r309 on Mutated virus mock-community profiling against ground truth (Tisza et al. 2026 Table S9)
- Coverage
- Not reported scored / Not reported eligible
- Uncertainty
- Not reported by the source
- Evidence
- Author-reported evaluation · source checkedTisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Supplemental Table S9, row 24 (base_tool 'Centrifuger', rank 'ani_capped', truth_mode 'capped'), column 'pearson' (cell F24)
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: source checked. Source checked does not mean independently reproduced.
Reproduction
- Split
- No split
- Adaptation
- Headline setting: minimum-hit-length 100, minimum score 0
- Scoring implementation
- Strict truth uses the provenance lineage at each rank; capped truth caps the rank by ANI (98-100%: subspecies, 90-95%: species, 80-85%: genus). Profiles normalised to relative abundance per tool; means over the six communities.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result -0.105 Individual claims | Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) Supplemental Table S9, row 24 (base_tool 'Centrifuger', rank 'ani_capped', truth_mode 'capped'), column 'pearson' (cell F24) Version: bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx) | source checked ["source-hash-verification","deterministic-table-parse","independent-cell-check"] · 2026-10-11 author reported Audit detailsRe-downloaded the pinned artifact and matched its SHA-256; compared every value with a separate stdlib parser written for this review (the extractor's script was not run) and checked a stratified sample by hand against the rendered table. Field: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
2 source records and release history
- Tisza et al. 2026 Supplemental Tables S1-S25 (bioRxiv media-1.xlsx) · Original source · bioRxiv 10.64898/2026.09.29.755457 v1 supplementary file DC1 (755457_file02.xlsx)
- EsViritu is a sensitive and specific profiler for viral pathogen detection and genome recovery in metagenomes · Original source · bioRxiv 10.64898/2026.09.29.755457 v1, posted 2026-09-30; JATS XML
Technical metadata and extraction receipts
Stable ID: rna-pathogen-20261011-tisza2026-result-mock-centrifuger-capped-pearson
- metric
- pearson-correlation
- metric direction
- higher
- unit
- unitless
- printed value
- -0.105
- numeric value
- -0.105
- metric qualifier
- abundance profile against truth; mean over mock communities; ANI-capped truth
- source locator
- Supplemental Table S9, row 24 (base_tool 'Centrifuger', rank 'ani_capped', truth_mode 'capped'), column 'pearson' (cell F24)
- missing metadata
- uncertainty: reason: unreported
- source anomaly
- Results 'EsViritu is an accurate profiler of mock virus communities' paragraph 2 says only the three one-per-family communities were measured in the divergence-capped metrics; Methods 'Mock communities' says all six communities were analysed together, and the Supplemental Table S9 caption says 'across mock communities'. The number of communities behind this mean is not certain. Value kept as printed.
- review
- method: source-hash-verification; deterministic-table-parse; independent-cell-check; reviewer: claude; reviewer note: Separate Claude review agent (reviewer-path), independent of the extractor; no human review claimed; date: 2026-10-11; artifact sha256: 0559022a3ff5ef5b2682e3c451eda51835c4c8d9be9dfdb1ebc9cd9295fb7701; retrieval url: https://www.biorxiv.org/content/biorxiv/early/2026/09/30/2026.09.29.755457/DC1/embed/media-1.xlsx?download=true; method note: Extracted by deterministic parse of the pinned XLSX sheet XML (extract/extract_tisza2026.py), with header and row labels asserted. printed_value is the cell text, or the shortest decimal that round-trips to the stored number; displayed spreadsheet formatting was not applied.; note: Re-downloaded the pinned artifact and matched its SHA-256; compared every value with a separate stdlib parser written for this review (the extractor's script was not run) and checked a stratified sample by hand against the rendered table.