rewirebio.iobenchmarks
Source

openproblems-label primary benchmark evidence

v1.0.0

Original source

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Records in this release that cite this source. A record can cite several sources.

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configurationMetricValueDatasetEvaluation
K-neighbors classifier (log CP10k)Accuracy0.8124625524266027 fractionCeNGEN (split by batch) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), Accuracy
K-neighbors classifier (log CP10k)Macro F10.39834484361073036 fractionCeNGEN (split by batch) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.831091398368635 fractionCeNGEN (split by batch) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score
K-neighbors classifier (log CP10k)Accuracy0.8492439964423362 fractionCeNGEN (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection CENGEN-RANDOM-ACCURACY: Label projection on CeNGEN (random split), Accuracy
K-neighbors classifier (log CP10k)Macro F10.7672490394127152 fractionCeNGEN (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection CENGEN-RANDOM-F1-MACRO: Label projection on CeNGEN (random split), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.8517360245741384 fractionCeNGEN (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection CENGEN-RANDOM-F1: Label projection on CeNGEN (random split), F1 score
K-neighbors classifier (log CP10k)Accuracy0.874492832025967 fractionPancreas (by batch) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-BATCH-ACCURACY: Label projection on Pancreas (by batch), Accuracy
K-neighbors classifier (log CP10k)Macro F10.8089500380663799 fractionPancreas (by batch) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-BATCH-F1-MACRO: Label projection on Pancreas (by batch), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.8731145520258626 fractionPancreas (by batch) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-BATCH-F1: Label projection on Pancreas (by batch), F1 score
K-neighbors classifier (log CP10k)Accuracy0.9650455927051672 fractionPancreas (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-RANDOM-ACCURACY: Label projection on Pancreas (random split), Accuracy
K-neighbors classifier (log CP10k)Macro F10.8962212379632082 fractionPancreas (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.964346201217482 fractionPancreas (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-RANDOM-F1: Label projection on Pancreas (random split), F1 score
K-neighbors classifier (log CP10k)Accuracy0.9463790446841295 fractionPancreas (random split with label noise) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), Accuracy
K-neighbors classifier (log CP10k)Macro F10.8361237623993133 fractionPancreas (random split with label noise) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.9460810866713062 fractionPancreas (random split with label noise) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 score
K-neighbors classifier (log CP10k)Accuracy0.8611835506519558 fractionTabula Muris Senis Lung (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), Accuracy
K-neighbors classifier (log CP10k)Macro F10.8714241831337218 fractionTabula Muris Senis Lung (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.8585497668879454 fractionTabula Muris Senis Lung (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 score
K-neighbors classifier (log CP10k)Accuracy0.12981704943557804 fractionZebrafish (by laboratory) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), Accuracy
K-neighbors classifier (log CP10k)Macro F10.16437714442609613 fractionZebrafish (by laboratory) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.14229308051699885 fractionZebrafish (by laboratory) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 score
K-neighbors classifier (log CP10k)Accuracy0.8060711523588554 fractionZebrafish (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), Accuracy
K-neighbors classifier (log CP10k)Macro F10.6240963193194412 fractionZebrafish (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 score
K-neighbors classifier (log CP10k)Weighted F10.8014734891499417 fractionZebrafish (random split) (Open Problems label projection split)K-neighbors classifier (log CP10k) on Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 score
K-neighbors classifier (log scran)Accuracy0.7872977831036548 fractionCeNGEN (split by batch) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), Accuracy
K-neighbors classifier (log scran)Macro F10.3507138447877583 fractionCeNGEN (split by batch) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.8046070625910249 fractionCeNGEN (split by batch) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score
K-neighbors classifier (log scran)Accuracy0.8380274730704615 fractionCeNGEN (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection CENGEN-RANDOM-ACCURACY: Label projection on CeNGEN (random split), Accuracy
K-neighbors classifier (log scran)Macro F10.7495378715122704 fractionCeNGEN (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection CENGEN-RANDOM-F1-MACRO: Label projection on CeNGEN (random split), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.8369482993272568 fractionCeNGEN (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection CENGEN-RANDOM-F1: Label projection on CeNGEN (random split), F1 score
K-neighbors classifier (log scran)Accuracy0.8290505815526102 fractionPancreas (by batch) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-BATCH-ACCURACY: Label projection on Pancreas (by batch), Accuracy
K-neighbors classifier (log scran)Macro F10.5774678768528779 fractionPancreas (by batch) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-BATCH-F1-MACRO: Label projection on Pancreas (by batch), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.832422691059586 fractionPancreas (by batch) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-BATCH-F1: Label projection on Pancreas (by batch), F1 score
K-neighbors classifier (log scran)Accuracy0.9644376899696049 fractionPancreas (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-ACCURACY: Label projection on Pancreas (random split), Accuracy
K-neighbors classifier (log scran)Macro F10.7715105401247113 fractionPancreas (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.963539669184525 fractionPancreas (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-F1: Label projection on Pancreas (random split), F1 score
K-neighbors classifier (log scran)Accuracy0.9411402157164869 fractionPancreas (random split with label noise) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), Accuracy
K-neighbors classifier (log scran)Macro F10.7218714554626218 fractionPancreas (random split with label noise) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.9404360005933883 fractionPancreas (random split with label noise) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 score
K-neighbors classifier (log scran)Accuracy0.8686058174523571 fractionTabula Muris Senis Lung (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), Accuracy
K-neighbors classifier (log scran)Macro F10.8275820800516215 fractionTabula Muris Senis Lung (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.8638651253107504 fractionTabula Muris Senis Lung (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 score
K-neighbors classifier (log scran)Accuracy0.1913844556896328 fractionZebrafish (by laboratory) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), Accuracy
K-neighbors classifier (log scran)Macro F10.1995615455583369 fractionZebrafish (by laboratory) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.2018575253249313 fractionZebrafish (by laboratory) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 score
K-neighbors classifier (log scran)Accuracy0.8022041763341067 fractionZebrafish (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), Accuracy
K-neighbors classifier (log scran)Macro F10.6493289517704377 fractionZebrafish (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 score
K-neighbors classifier (log scran)Weighted F10.8026197598424966 fractionZebrafish (random split) (Open Problems label projection split)K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 score
Logistic regression (log CP10k)Accuracy0.8783702816057519 fractionCeNGEN (split by batch) (Open Problems label projection split)Logistic regression (log CP10k) on Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), Accuracy
Logistic regression (log CP10k)Macro F10.5108683585871248 fractionCeNGEN (split by batch) (Open Problems label projection split)Logistic regression (log CP10k) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score

Claims

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Models, benchmarks and other records

Methods (2)

Configurations (14)

Benchmarks (1)

Tasks (25)

Dataset subsets (8)

Evaluations (384)

Evidence

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Evidence table

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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

15 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statementOriginal source and locationReview and provenance
Artifact SHA-256
e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.artifact_sha256

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Artifact url
https://www.openproblems.bio/benchmarks/label_projection/v1.0.0/
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.artifact_url

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Hash scope
Exact retrieved primary paper artifact bytes.
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.hash_scope

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Retrieved at
2026-09-16T21:16:30.026457+00:00
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.retrieved_at

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Review method
1 values
  • automated-source-review
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.review.method

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Review: scope
Source identification and table transcription; no independent experimental reproduction.
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.review.scope

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Url
https://www.openproblems.bio/benchmarks/label_projection/v1.0.0/
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.url

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Version
v1.0.0
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: attributes.version

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Description
Primary reference; inspect retrieval status and review scope.
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Search facets
None recorded
Source metadata
openproblems-label primary benchmark evidence

Original source ↗

No field-specific location recorded

Version: v1.0.0
Retrieved: 2026-09-16T21:16:30.026457+00:00

catalogued

No individual claim review recorded

Audit details

Field: facets

Source artifact SHA-256: e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

Primary reference; inspect retrieval status and review scope.

Release history

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Technical metadata and extraction receipts

Stable ID: expansion-p3-open-problems

url
https://www.openproblems.bio/benchmarks/label_projection/v1.0.0/
version
v1.0.0
retrieved at
2026-09-16T21:16:30.026457+00:00
artifact sha256
e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1
artifact url
https://www.openproblems.bio/benchmarks/label_projection/v1.0.0/
hash scope
Exact retrieved primary paper artifact bytes.
review
scope: Source identification and table transcription; no independent experimental reproduction.; method: automated-source-review
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