Configuration

Logistic regression (log scran)

Logistic Regression estimates parameters of a logistic function for multivariate classification tasks. Here, we use 100-dimensional whitened PCA coordinates as independent variables, and the model minimises the cross entropy loss over all cell type classes.

24 evaluations · 24 results

Overview

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

24 evaluations · 24 results. Different protocols are not a single leaderboard.

Sorted by Accuracy (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Accuracy	Macro F1	Weighted F1
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-RANDOM-ACCURACY: Label projection on Pancreas (random split), Accuracy, Pancreas (random split) (Open Problems label projection split)	0.945 (best in column)	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-BATCH-ACCURACY: Label projection on Pancreas (by batch), Accuracy, Pancreas (by batch) (Open Problems label projection split)	0.942	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), Accuracy, Tabula Muris Senis Lung (random split) (Open Problems label projection split)	0.925	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), Accuracy, Zebrafish (random split) (Open Problems label projection split)	0.843	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection CENGEN-RANDOM-ACCURACY: Label projection on CeNGEN (random split), Accuracy, CeNGEN (random split) (Open Problems label projection split)	0.827	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), Accuracy, Pancreas (random split with label noise) (Open Problems label projection split)	0.805	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), Accuracy, CeNGEN (split by batch) (Open Problems label projection split)	0.772	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), Accuracy, Zebrafish (by laboratory) (Open Problems label projection split)	0.245	Not reported	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score, CeNGEN (split by batch) (Open Problems label projection split)	Not reported	Not reported	0.804
Logistic regression (log scran)Evaluation	Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score, CeNGEN (split by batch) (Open Problems label projection split)	Not reported	0.484	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection CENGEN-RANDOM-F1: Label projection on CeNGEN (random split), F1 score, CeNGEN (random split) (Open Problems label projection split)	Not reported	Not reported	0.84
Logistic regression (log scran)Evaluation	Open Problems label projection CENGEN-RANDOM-F1-MACRO: Label projection on CeNGEN (random split), Macro F1 score, CeNGEN (random split) (Open Problems label projection split)	Not reported	0.791	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-BATCH-F1: Label projection on Pancreas (by batch), F1 score, Pancreas (by batch) (Open Problems label projection split)	Not reported	Not reported	0.94 (best in column)
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-BATCH-F1-MACRO: Label projection on Pancreas (by batch), Macro F1 score, Pancreas (by batch) (Open Problems label projection split)	Not reported	0.636	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-RANDOM-F1: Label projection on Pancreas (random split), F1 score, Pancreas (random split) (Open Problems label projection split)	Not reported	Not reported	0.938
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 score, Pancreas (random split) (Open Problems label projection split)	Not reported	0.632	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 score, Pancreas (random split with label noise) (Open Problems label projection split)	Not reported	Not reported	0.776
Logistic regression (log scran)Evaluation	Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score, Pancreas (random split with label noise) (Open Problems label projection split)	Not reported	0.428	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 score, Tabula Muris Senis Lung (random split) (Open Problems label projection split)	Not reported	Not reported	0.924
Logistic regression (log scran)Evaluation	Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score, Tabula Muris Senis Lung (random split) (Open Problems label projection split)	Not reported	0.876 (best in column)	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 score, Zebrafish (by laboratory) (Open Problems label projection split)	Not reported	Not reported	0.29
Logistic regression (log scran)Evaluation	Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 score, Zebrafish (by laboratory) (Open Problems label projection split)	Not reported	0.225	Not reported
Logistic regression (log scran)Evaluation	Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 score, Zebrafish (random split) (Open Problems label projection split)	Not reported	Not reported	0.842
Logistic regression (log scran)Evaluation	Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 score, Zebrafish (random split) (Open Problems label projection split)	Not reported	0.709	Not reported

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Exact evaluated configurations and original reported results
Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Logistic regression (log scran)	Task: Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), Accuracy Dataset subset: CeNGEN (split by batch) (Open Problems label projection split)	0.772 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), Accuracy 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score Dataset subset: CeNGEN (split by batch) (Open Problems label projection split)	0.804 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Dataset subset: CeNGEN (split by batch) (Open Problems label projection split)	0.484 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(logistic_regression), paramset(log scran), metric(f1_macro)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection CENGEN-RANDOM-ACCURACY: Label projection on CeNGEN (random split), Accuracy Dataset subset: CeNGEN (random split) (Open Problems label projection split)	0.827 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection CENGEN-RANDOM-ACCURACY: Label projection on CeNGEN (random split), Accuracy 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test randomly. Dimensions: 100955 cells, 22469 genes. 169 cell types avg. 597±800 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(cengen_random), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection CENGEN-RANDOM-F1: Label projection on CeNGEN (random split), F1 score Dataset subset: CeNGEN (random split) (Open Problems label projection split)	0.84 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection CENGEN-RANDOM-F1: Label projection on CeNGEN (random split), F1 score 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test randomly. Dimensions: 100955 cells, 22469 genes. 169 cell types avg. 597±800 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(cengen_random), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection CENGEN-RANDOM-F1-MACRO: Label projection on CeNGEN (random split), Macro F1 score Dataset subset: CeNGEN (random split) (Open Problems label projection split)	0.791 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection CENGEN-RANDOM-F1-MACRO: Label projection on CeNGEN (random split), Macro F1 score 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test randomly. Dimensions: 100955 cells, 22469 genes. 169 cell types avg. 597±800 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(cengen_random), method(logistic_regression), paramset(log scran), metric(f1_macro)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-BATCH-ACCURACY: Label projection on Pancreas (by batch), Accuracy Dataset subset: Pancreas (by batch) (Open Problems label projection split)	0.942 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-BATCH-ACCURACY: Label projection on Pancreas (by batch), Accuracy Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test by experimental batch. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_batch), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-BATCH-F1: Label projection on Pancreas (by batch), F1 score Dataset subset: Pancreas (by batch) (Open Problems label projection split)	0.94 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-BATCH-F1: Label projection on Pancreas (by batch), F1 score Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test by experimental batch. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_batch), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-BATCH-F1-MACRO: Label projection on Pancreas (by batch), Macro F1 score Dataset subset: Pancreas (by batch) (Open Problems label projection split)	0.636 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-BATCH-F1-MACRO: Label projection on Pancreas (by batch), Macro F1 score Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test by experimental batch. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_batch), method(logistic_regression), paramset(log scran), metric(f1_macro)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-RANDOM-ACCURACY: Label projection on Pancreas (random split), Accuracy Dataset subset: Pancreas (random split) (Open Problems label projection split)	0.945 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-RANDOM-ACCURACY: Label projection on Pancreas (random split), Accuracy Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_random), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-RANDOM-F1: Label projection on Pancreas (random split), F1 score Dataset subset: Pancreas (random split) (Open Problems label projection split)	0.938 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-RANDOM-F1: Label projection on Pancreas (random split), F1 score Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_random), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 score Dataset subset: Pancreas (random split) (Open Problems label projection split)	0.632 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 score Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_random), method(logistic_regression), paramset(log scran), metric(f1_macro)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), Accuracy Dataset subset: Pancreas (random split with label noise) (Open Problems label projection split)	0.805 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), Accuracy Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_random_label_noise), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 score Dataset subset: Pancreas (random split with label noise) (Open Problems label projection split)	0.776 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 score Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_random_label_noise), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score Dataset subset: Pancreas (random split with label noise) (Open Problems label projection split)	0.428 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(pancreas_random_label_noise), method(logistic_regression), paramset(log scran), metric(f1_macro)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), Accuracy Dataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split)	0.925 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), Accuracy All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 score Dataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split)	0.924 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 score All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Dataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split)	0.876 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(logistic_regression), paramset(log scran), metric(f1_macro)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), Accuracy Dataset subset: Zebrafish (by laboratory) (Open Problems label projection split)	0.245 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), Accuracy 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test by laboratory. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(zebrafish_labs), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 score Dataset subset: Zebrafish (by laboratory) (Open Problems label projection split)	0.29 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 score 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test by laboratory. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(zebrafish_labs), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 score Dataset subset: Zebrafish (by laboratory) (Open Problems label projection split)	0.225 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 score 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test by laboratory. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(zebrafish_labs), method(logistic_regression), paramset(log scran), metric(f1_macro)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), Accuracy Dataset subset: Zebrafish (random split) (Open Problems label projection split)	0.843 Accuracy fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), Accuracy 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test randomly. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(zebrafish_random), method(logistic_regression), paramset(log scran), metric(accuracy)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 score Dataset subset: Zebrafish (random split) (Open Problems label projection split)	0.842 Weighted F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 score 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test randomly. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(zebrafish_random), method(logistic_regression), paramset(log scran), metric(f1)
Configuration: Logistic regression (log scran)	Task: Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 score Dataset subset: Zebrafish (random split) (Open Problems label projection split)	0.709 Macro F1 fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source Logistic regression (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 score 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test randomly. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Aggregation: Not reported openproblems-label primary benchmark evidence · results, dataset(zebrafish_random), method(logistic_regression), paramset(log scran), metric(f1_macro)

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