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NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)

NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1), a configuration of Nucleotide Transformer v2: Regime U (unsupervised pretraining); evaluation 1% eval (evaluated with 1% of the training set); context column '∼12 k'.

7 evaluations · 7 results

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Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

7 evaluations · 7 results. Different protocols are not a single leaderboard.

Sorted by Spearman (GUANinE v1.1 test set) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configurationProtocol and datasetSpearman (GUANinE v1.1 test set)
NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)EvaluationGUANinE v1.1 gpra-d, Spearman rho x100 (Table 2), GUANinE gpra-d test set76.6 (best in column)
NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)EvaluationGUANinE v1.1 cons30, Spearman rho x100 (Table 2), GUANinE cons30 test set75.6
NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)EvaluationGUANinE v1.1 gpra-c, Spearman rho x100 (Table 2), GUANinE gpra-c test set72.7
NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)EvaluationGUANinE v1.1 cons100, Spearman rho x100 (Table 2), GUANinE cons100 test set63.5
NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)EvaluationGUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2), GUANinE dnase-propensity test set46.6
NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)EvaluationGUANinE v1.1 ccre-propensity, Spearman rho x100 (Table 2), GUANinE ccre-propensity test set38.2
NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)EvaluationGUANinE v1.1 cadd-snv, Spearman rho x100 (Table 3), GUANinE cadd-snv test set26.5
All 7 result rows with coverage, uncertainty and sources
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Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 cadd-snv, Spearman rho x100 (Table 3)
Dataset: GUANinE cadd-snv test set		26.5 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-500m on GUANinE cadd-snv

lit-genomics-20261011-guanine-protocol-cadd-snv

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 3, row 'NTv2-500m', column 'cadd-snv' (ρ)
Configuration: NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 ccre-propensity, Spearman rho x100 (Table 2)
Dataset: GUANinE ccre-propensity test set		38.2 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-500m on GUANinE ccre-propensity

lit-genomics-20261011-guanine-protocol-ccre-propensity

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'NTv2-500m', column 'ccre-propensity' (ρ)
Configuration: NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 cons100, Spearman rho x100 (Table 2)
Dataset: GUANinE cons100 test set		63.5 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-500m on GUANinE cons100

lit-genomics-20261011-guanine-protocol-cons100

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'NTv2-500m', column 'cons100' (ρ)
Configuration: NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 cons30, Spearman rho x100 (Table 2)
Dataset: GUANinE cons30 test set		75.6 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-500m on GUANinE cons30

lit-genomics-20261011-guanine-protocol-cons30

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'NTv2-500m', column 'cons30' (ρ)
Configuration: NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2)
Dataset: GUANinE dnase-propensity test set		46.6 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-500m on GUANinE dnase-propensity

lit-genomics-20261011-guanine-protocol-dnase-propensity

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'NTv2-500m', column 'dnase-propensity' (ρ)
Configuration: NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 gpra-c, Spearman rho x100 (Table 2)
Dataset: GUANinE gpra-c test set		72.7 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-500m on GUANinE gpra-c

lit-genomics-20261011-guanine-protocol-gpra-c

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'NTv2-500m', column 'gpra-c' (ρ)
Configuration: NTv2-500m (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 gpra-d, Spearman rho x100 (Table 2)
Dataset: GUANinE gpra-d test set		76.6 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

NTv2-500m on GUANinE gpra-d

lit-genomics-20261011-guanine-protocol-gpra-d

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'NTv2-500m', column 'gpra-d' (ρ)

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

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Stable ID: lit-genomics-20261011-guanine-config-ntv2-500m-1pct

areas
dna-genomes
contexts
research
method types
foundation_model
reported name
NTv2-500m
foundation model eligible
true
parameters
Regime U (unsupervised pretraining); evaluation 1% eval (evaluated with 1% of the training set); context column '∼12 k'
source locator
Table 2 row 'NTv2-500m', columns Reg., Eval. and Context
access reuse
Not stated in the source; see the model's own release
missing metadata
version: reason: unreported; note: Only the printed row label identifies the checkpoint
provenance note
NTv2-500m as evaluated in GUANinE v1.1.
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