DNase hypersensitivity propensity of hg38 sequences.
32 evaluations · 32 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: 5-mer kNN (fine-tuned, GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 32 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source5-mer kNN on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer kNN', column 'dnase-propensity' (ρ) |
| Configuration: 5-mer LinSVR (fine-tuned, GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 36.3 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and source5-mer LinSVR on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer LinSVR', column 'dnase-propensity' (ρ) |
| Configuration: AIDO.DNA_300m (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 42.7 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceAIDO.DNA_300m on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'AIDO.DNA_300m', column 'dnase-propensity' (ρ) |
| Configuration: Borzoi (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 70.7 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceBorzoi on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Borzoi', column 'dnase-propensity' (ρ) |
| Configuration: Caduceus-PS (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 43 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCaduceus-PS on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Caduceus-PS', column 'dnase-propensity' (ρ) |
| Configuration: ChromBPNet-ATAC-F0 (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 41.5 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceChromBPNet-ATAC-F0 on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'ChromBPNet-ATAC-F0', column 'dnase-propensity' (ρ) |
| Configuration: ChromBPNet-ATAC-F3 (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 40.5 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceChromBPNet-ATAC-F3 on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'ChromBPNet-ATAC-F3', column 'dnase-propensity' (ρ) |
| Configuration: DeepSEA (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 34.7 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepSEA on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'DeepSEA', column 'dnase-propensity' (ρ) |
| Configuration: DNABERT-2 (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 41.7 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDNABERT-2 on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'DNABERT-2', column 'dnase-propensity' (ρ) |
| Configuration: ENCFF180XQC (zero-shot, GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 24.2 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceENCFF180XQC on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'ENCFF180XQC', column 'dnase-propensity' (ρ) |
| Configuration: Enformer (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 64.9 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEnformer on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer', column 'dnase-propensity' (ρ) |
| Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 68.1 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEnformer (Pre-output) on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'dnase-propensity' (ρ) |
| Configuration: Enigma-Distilled (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 65.8 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEnigma-Distilled on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enigma-Distilled', column 'dnase-propensity' (ρ) |
| Configuration: ESA-dna2vec (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 26 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceESA-dna2vec on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'ESA-dna2vec', column 'dnase-propensity' (ρ) |
| Configuration: Evo2_1B_base (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 41.8 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2_1B_base on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Evo2_1B_base', column 'dnase-propensity' (ρ) |
| Configuration: Evo2_7B (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 47.2 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2_7B on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Evo2_7B', column 'dnase-propensity' (ρ) |
| Configuration: Evo2_7B_base (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 46.9 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceEvo2_7B_base on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Evo2_7B_base', column 'dnase-propensity' (ρ) |
| Configuration: GC-content (zero-shot, GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 20.6 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceGC-content on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'GC-content', column 'dnase-propensity' (ρ) |
| Configuration: GENA-LM-bert-base-t2t (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 42.8 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM-bert-base-t2t on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'GENA-LM-bert-base-t2t', column 'dnase-propensity' (ρ) |
| Configuration: GENA-LM-bert-base-t2t-enf (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 54.3 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM-bert-base-t2t-enf on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'GENA-LM-bert-base-t2t-enf', column 'dnase-propensity' (ρ) |
| Configuration: GENA-LM-bert-large-t2t (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 44.4 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM-bert-large-t2t on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'GENA-LM-bert-large-t2t', column 'dnase-propensity' (ρ) |
| Configuration: GENA-LM-bigbird-base-t2t (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 44.1 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceGENA-LM-bigbird-base-t2t on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'GENA-LM-bigbird-base-t2t', column 'dnase-propensity' (ρ) |
| Configuration: hgT5-8195 (fine-tuned, GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 56.6 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcehgT5-8195 on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'hgT5-8195', column 'dnase-propensity' (ρ) |
| Configuration: Mistral-DNA-422m-hg38 (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 39.2 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceMistral-DNA-422m-hg38 on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Mistral-DNA-422m-hg38', column 'dnase-propensity' (ρ) |
| Configuration: NTv2-100m (1% eval (evaluated with 1% of the training set), GUANinE v1.1) | Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set | 42.1 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceNTv2-100m on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'NTv2-100m', column 'dnase-propensity' (ρ) |
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| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Source location Table 2 column header Context-only references | GUANinE v1.1 reveals complementarity of supervised and genomic language models Table 2 column header Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Split Test set Context-only references | GUANinE v1.1 reveals complementarity of supervised and genomic language models Table 2 column header Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version GUANinE v1.1 Context-only references | GUANinE v1.1 reveals complementarity of supervised and genomic language models Table 2 column header Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Description DNase hypersensitivity propensity of hg38 sequences. Context-only references | GUANinE v1.1 reveals complementarity of supervised and genomic language models Table 2 column header Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Name GUANinE dnase-propensity test set Context-only references | GUANinE v1.1 reveals complementarity of supervised and genomic language models Table 2 column header Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Stable ID: lit-genomics-20261011-guanine-data-dnase-propensity