Configuration

Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)

Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1): Regime S (supervised pretraining); evaluation 1% eval (evaluated with 1% of the training set); context column '≈197 k'.

6 evaluations · 6 results

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Evaluations and results

6 evaluations · 6 results. Different protocols are not a single leaderboard.

Sorted by Spearman (GUANinE v1.1 test set) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Spearman (GUANinE v1.1 test set)
Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Evaluation	GUANinE v1.1 cons30, Spearman rho x100 (Table 2), GUANinE cons30 test set	74.7 (best in column)
Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Evaluation	GUANinE v1.1 gpra-d, Spearman rho x100 (Table 2), GUANinE gpra-d test set	74.2
Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Evaluation	GUANinE v1.1 gpra-c, Spearman rho x100 (Table 2), GUANinE gpra-c test set	70.7
Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Evaluation	GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2), GUANinE dnase-propensity test set	68.1
Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Evaluation	GUANinE v1.1 cons100, Spearman rho x100 (Table 2), GUANinE cons100 test set	62.4
Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Evaluation	GUANinE v1.1 ccre-propensity, Spearman rho x100 (Table 2), GUANinE ccre-propensity test set	55.1

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)	Protocol: GUANinE v1.1 ccre-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE ccre-propensity test set	55.1 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer (Pre-output) on GUANinE ccre-propensity lit-genomics-20261011-guanine-protocol-ccre-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'ccre-propensity' (ρ)
Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)	Protocol: GUANinE v1.1 cons100, Spearman rho x100 (Table 2) Dataset: GUANinE cons100 test set	62.4 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer (Pre-output) on GUANinE cons100 lit-genomics-20261011-guanine-protocol-cons100 Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'cons100' (ρ)
Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)	Protocol: GUANinE v1.1 cons30, Spearman rho x100 (Table 2) Dataset: GUANinE cons30 test set	74.7 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer (Pre-output) on GUANinE cons30 lit-genomics-20261011-guanine-protocol-cons30 Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'cons30' (ρ)
Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)	Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set	68.1 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer (Pre-output) on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'dnase-propensity' (ρ)
Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)	Protocol: GUANinE v1.1 gpra-c, Spearman rho x100 (Table 2) Dataset: GUANinE gpra-c test set	70.7 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer (Pre-output) on GUANinE gpra-c lit-genomics-20261011-guanine-protocol-gpra-c Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'gpra-c' (ρ)
Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)	Protocol: GUANinE v1.1 gpra-d, Spearman rho x100 (Table 2) Dataset: GUANinE gpra-d test set	74.2 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Independent external evaluation · Source checked Methods, coverage and source Enformer (Pre-output) on GUANinE gpra-d lit-genomics-20261011-guanine-protocol-gpra-d Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'gpra-d' (ρ)

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

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GUANinE v1.1 reveals complementarity of supervised and genomic language models · Original source · Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-guanine-config-enformer-pre-output-1pct

areas: dna-genomes
contexts: research
method types: supervised_machine_learning
reported name: Enformer (Pre-output)
foundation model eligible: false
parameters: Regime S (supervised pretraining); evaluation 1% eval (evaluated with 1% of the training set); context column '≈197 k'
source locator: Table 2 row 'Enformer (Pre-output)', columns Reg., Eval. and Context
access reuse: Not stated in the source; see the model's own release
missing metadata: version: reason: unreported; note: Only the printed row label identifies the checkpoint
provenance note: Enformer (Pre-output) as evaluated in GUANinE v1.1.

Related records

configuration of: Enformer
system: Enformer (Pre-output) on GUANinE ccre-propensity
system: Enformer (Pre-output) on GUANinE cons100
system: Enformer (Pre-output) on GUANinE cons30
system: Enformer (Pre-output) on GUANinE dnase-propensity
system: Enformer (Pre-output) on GUANinE gpra-c
system: Enformer (Pre-output) on GUANinE gpra-d

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