rewirebio.iobenchmarks
Evaluation

Enformer (Pre-output) on GUANinE cons100

Published comparison transcribed from the pinned source; not reproduced.

Evaluation results

1 evaluation · 1 result. Different protocols are not a single leaderboard.

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Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)Protocol: GUANinE v1.1 cons100, Spearman rho x100 (Table 2)
Dataset: GUANinE cons100 test set
62.4 Spearman (GUANinE v1.1 test set)
unitless · higher

Uncertainty: Not reported by the source

Coverage: Not reported scored / Not reported eligible

Independent external evaluation · Source checked
Methods, coverage and source

Enformer (Pre-output) on GUANinE cons100

lit-genomics-20261011-guanine-protocol-cons100

Aggregation: Not reported

GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row 'Enformer (Pre-output)', column 'cons100' (ρ)

Source checking is not independent reproduction. Release 2026-10-22-1b7cf027e4f6.

Research readiness

0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.

Readiness checks, gaps and artifacts

Release 2026-10-22-1b7cf027e4f6 · Evidence verified: Not verified

Evidence incomplete

Replay metrics

Exact outcomes, predictions, identifiers and evaluator are connected.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified

Verified: Not verified

Evidence incomplete

Investigate discrepancies

Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Metrics are recomputed from the saved predictions: not yet verified
  • Sample annotations are recorded: not yet verified
  • Dependence between samples is assessed: not yet verified

Verified: Not verified

Evidence incomplete

Run locally

A pinned recipe describes the inputs, environment and resource requirements.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • A pinned run recipe exists: not yet verified
  • Compute requirements are estimated: not yet verified

Verified: Not verified

Evidence incomplete

Validate independently

Separate data and exposure records support an independent test.

Missing or unresolved evidence

  • No verified artifact manifest is linked to this exact record.
  • File checksums match the recorded files: not yet verified
  • Predictions are matched to the right samples: not yet verified
  • Score meaning and direction are confirmed: not yet verified
  • Independent validation data exist: not yet verified
  • Overlap with training data is checked: not yet verified

Verified: Not verified

Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.

Artifacts and reproduction

No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.

Evaluation procedure

GUANinE v1.1 cons100, Spearman rho x100 (Table 2)

Configuration
Enformer (Pre-output) (1% eval (evaluated with 1% of the training set), GUANinE v1.1)
Protocol
GUANinE v1.1 cons100, Spearman rho x100 (Table 2)
Dataset
GUANinE cons100 test set
origin
Independent external evaluation
configuration
Primary source as retrieved 2026-10-11
protocol id
lit-genomics-20261011-guanine-protocol-cons100
dataset version
GUANinE v1.1
split
Test set
population
Not reported
inputs
hg38 sequence; context '≈197 k'
adaptation
1% eval (evaluated with 1% of the training set)
metric implementation
Spearman rho x100 as printed
aggregation
Not reported
budget
Not reported

Metadata review: source checked. Unreported conditions prevent automatic comparisons.

Reproduction

Split
Test set
Adaptation
1% eval (evaluated with 1% of the training set)
Scoring implementation
Spearman rho x100 as printed

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

18 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-10-22-1b7cf027e4f6
Property and statementOriginal source and locationReview and provenance
Comparison: adaptation
1% eval (evaluated with 1% of the training set)
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.adaptation

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: aggregation
Not reported
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.aggregation

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: budget
Not reported
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.budget

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: dataset version
GUANinE v1.1
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.dataset_version

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: inputs
hg38 sequence; context '≈197 k'
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.inputs

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: metric implementation
Spearman rho x100 as printed
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.metric_implementation

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: population
Not reported
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

missing or unspecified

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.population

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: protocol id
lit-genomics-20261011-guanine-protocol-cons100
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.protocol_id

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Comparison: split
Test set
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.comparison.split

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Origin
independent_paper
Context-only references
GUANinE v1.1 reveals complementarity of supervised and genomic language models

Original source ↗

Table 2 row 'Enformer (Pre-output)', column 'cons100'

Version: Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML
Retrieved: 2026-10-11T00:40:24Z

not individually reviewed

No individual claim review recorded

independent paper

Audit details

Field: attributes.origin

Source artifact SHA-256: f6cc4294a1519fb5579eebb29ffd919afad0198a3bf8b751635d73b17b33ef79

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

How to read the evidence

Sources and history

Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

1 source record and release historyDownload this release (gzip)
Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-guanine-eval-enformer-pre-output-1pct-cons100

areas
dna-genomes
contexts
research
origin
independent_paper
protocol
lit-genomics-20261011-guanine-protocol-cons100
version
Primary source as retrieved 2026-10-11
comparison
protocol id: lit-genomics-20261011-guanine-protocol-cons100; dataset version: GUANinE v1.1; split: Test set; population: Not reported; inputs: hg38 sequence; context '≈197 k'; adaptation: 1% eval (evaluated with 1% of the training set); metric implementation: Spearman rho x100 as printed; aggregation: Not reported; budget: Not reported
source locator
Table 2 row 'Enformer (Pre-output)', column 'cons100'
missing metadata
comparison.aggregation: reason: unreported; comparison.budget: reason: unreported; comparison.population: reason: unreported
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