Configuration

5-mer kNN (fine-tuned, GUANinE v1.1)

5-mer kNN: Regime B (non-neural baseline); evaluation fine-tuned; context column '511±1'.

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Evaluations and results

6 evaluations · 6 results. Different protocols are not a single leaderboard.

Sorted by Spearman (GUANinE v1.1 test set) (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.

Tested configuration	Protocol and dataset	Spearman (GUANinE v1.1 test set)
5-mer kNN (fine-tuned, GUANinE v1.1)Evaluation	GUANinE v1.1 gpra-d, Spearman rho x100 (Table 2), GUANinE gpra-d test set	62.1 (best in column)
5-mer kNN (fine-tuned, GUANinE v1.1)Evaluation	GUANinE v1.1 gpra-c, Spearman rho x100 (Table 2), GUANinE gpra-c test set	58.6
5-mer kNN (fine-tuned, GUANinE v1.1)Evaluation	GUANinE v1.1 cons30, Spearman rho x100 (Table 2), GUANinE cons30 test set	52.6
5-mer kNN (fine-tuned, GUANinE v1.1)Evaluation	GUANinE v1.1 cons100, Spearman rho x100 (Table 2), GUANinE cons100 test set	44.5
5-mer kNN (fine-tuned, GUANinE v1.1)Evaluation	GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2), GUANinE dnase-propensity test set	32
5-mer kNN (fine-tuned, GUANinE v1.1)Evaluation	GUANinE v1.1 ccre-propensity, Spearman rho x100 (Table 2), GUANinE ccre-propensity test set	23.4

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Tested configuration	Protocol and dataset	Finding	Evidence and details
Configuration: 5-mer kNN (fine-tuned, GUANinE v1.1)	Protocol: GUANinE v1.1 ccre-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE ccre-propensity test set	23.4 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 5-mer kNN on GUANinE ccre-propensity lit-genomics-20261011-guanine-protocol-ccre-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer kNN', column 'ccre-propensity' (ρ)
Configuration: 5-mer kNN (fine-tuned, GUANinE v1.1)	Protocol: GUANinE v1.1 cons100, Spearman rho x100 (Table 2) Dataset: GUANinE cons100 test set	44.5 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 5-mer kNN on GUANinE cons100 lit-genomics-20261011-guanine-protocol-cons100 Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer kNN', column 'cons100' (ρ)
Configuration: 5-mer kNN (fine-tuned, GUANinE v1.1)	Protocol: GUANinE v1.1 cons30, Spearman rho x100 (Table 2) Dataset: GUANinE cons30 test set	52.6 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 5-mer kNN on GUANinE cons30 lit-genomics-20261011-guanine-protocol-cons30 Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer kNN', column 'cons30' (ρ)
Configuration: 5-mer kNN (fine-tuned, GUANinE v1.1)	Protocol: GUANinE v1.1 dnase-propensity, Spearman rho x100 (Table 2) Dataset: GUANinE dnase-propensity test set	32 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 5-mer kNN on GUANinE dnase-propensity lit-genomics-20261011-guanine-protocol-dnase-propensity Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer kNN', column 'dnase-propensity' (ρ)
Configuration: 5-mer kNN (fine-tuned, GUANinE v1.1)	Protocol: GUANinE v1.1 gpra-c, Spearman rho x100 (Table 2) Dataset: GUANinE gpra-c test set	58.6 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 5-mer kNN on GUANinE gpra-c lit-genomics-20261011-guanine-protocol-gpra-c Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer kNN', column 'gpra-c' (ρ)
Configuration: 5-mer kNN (fine-tuned, GUANinE v1.1)	Protocol: GUANinE v1.1 gpra-d, Spearman rho x100 (Table 2) Dataset: GUANinE gpra-d test set	62.1 Spearman (GUANinE v1.1 test set) unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible	Author-reported evaluation · Source checked Methods, coverage and source 5-mer kNN on GUANinE gpra-d lit-genomics-20261011-guanine-protocol-gpra-d Aggregation: Not reported GUANinE v1.1 reveals complementarity of supervised and genomic language models · Table 2, row '5-mer kNN', column 'gpra-d' (ρ)

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Release 2026-10-22-1b7cf027e4f6 · Record review: source checked

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GUANinE v1.1 reveals complementarity of supervised and genomic language models · Original source · Bioinformatics 2026, btag427 (issue date 2026-08-01); PMC13501288 full-text XML

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Technical metadata and extraction receipts

Stable ID: lit-genomics-20261011-guanine-config-5-mer-knn-ft

areas: dna-genomes
contexts: research
method types: conventional_pipeline
reported name: 5-mer kNN
foundation model eligible: false
parameters: Regime B (non-neural baseline); evaluation fine-tuned; context column '511±1'
source locator: Table 2 row '5-mer kNN', columns Reg., Eval. and Context
access reuse: Not stated in the source; see the model's own release
missing metadata: version: reason: unreported; note: Only the printed row label identifies the checkpoint
provenance note: 5-mer kNN as evaluated in GUANinE v1.1.

Related records

configuration of: 5-mer kNN baseline
system: 5-mer kNN on GUANinE ccre-propensity
system: 5-mer kNN on GUANinE cons100
system: 5-mer kNN on GUANinE cons30
system: 5-mer kNN on GUANinE dnase-propensity
system: 5-mer kNN on GUANinE gpra-c
system: 5-mer kNN on GUANinE gpra-d

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