tape primary benchmark evidence

What this source contributed

Records in this release that cite this source. A record can cite several sources.

• 4 configurations
• 1 benchmark
• 5 tasks
• 5 datasets
• 50 evaluations
• 50 results
• 5 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Claims

Statements this source supports, each with where in the source it was checked.

• TAPE Contact Prediction: links:part_of:discovery-benchmark-tape: Part of TAPE (Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction)
• TAPE Fluorescence: links:part_of:discovery-benchmark-tape: Part of TAPE (Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnFluorescence; Table2,p.7,row2(No pretraining/LSTM),columnFluorescence; Table2,p.7,row3(No pretraining/ResNet),columnFluorescence; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnFluorescence; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnFluorescence; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnFluorescence; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnFluorescence; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnFluorescence; Table2,p.7,row9(One-hot baseline/One-hot),columnFluorescence; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnFluorescence)
• TAPE Remote Homology Detection: links:part_of:discovery-benchmark-tape: Part of TAPE (Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology)
• TAPE Secondary Structure: links:part_of:discovery-benchmark-tape: Part of TAPE (Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure)
• TAPE Stability: links:part_of:discovery-benchmark-tape: Part of TAPE (Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnStability; Table2,p.7,row2(No pretraining/LSTM),columnStability; Table2,p.7,row3(No pretraining/ResNet),columnStability; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnStability; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnStability; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnStability; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnStability; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnStability; Table2,p.7,row9(One-hot baseline/One-hot),columnStability; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnStability)

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Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.