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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
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10 evaluations · 10 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Model: TAPE ResNet | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.29 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE ResNet: ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction |
| Model: TAPE Transformer | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.36 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE Transformer: ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction |
| Configuration: ResNet (no pretraining) | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.2 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceResNet (no pretraining): ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row3(No pretraining/ResNet),columnContact prediction |
| Configuration: LSTM (no pretraining) | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.19 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceLSTM (no pretraining): ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row2(No pretraining/LSTM),columnContact prediction |
| Model: TAPE Unirep | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.34 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTAPE Unirep: ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction |
| Configuration: Alignment | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.64 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction |
| Model: TAPE LSTM | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.39 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction |
| Configuration: Transformer (no pretraining) | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.32 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransformer (no pretraining): ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row1(No pretraining/Transformer),columnContact prediction |
| Model: TAPE Bepler | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.4 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE Bepler: ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction |
| Method: TAPE One Hot | Task: TAPE Contact Prediction Dataset: ProteinNet CASP12 | 0.29 precision at L/5 fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE One Hot: ProteinNet CASP12 CASP12 test, 30% sequence-identity partition; medium/long-range contacts Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
7 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.reported_population.count 40 Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.reported_population.unit proteins; top L/5 pairs per protein Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.split CASP12 test, 30% sequence-identity partition; medium/long-range contacts Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.subset Not reported Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name ProteinNet CASP12 Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnContact prediction; Table2,p.7,row2(No pretraining/LSTM),columnContact prediction; Table2,p.7,row3(No pretraining/ResNet),columnContact prediction; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnContact prediction; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnContact prediction; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnContact prediction; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnContact prediction; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnContact prediction; Table2,p.7,row9(One-hot baseline/One-hot),columnContact prediction; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnContact prediction Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-dataset-b2114365a5517543b7