Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
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Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
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No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
10 evaluations · 10 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Model: TAPE Bepler | Task: TAPE Secondary Structure Dataset: CB513 | 0.73 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure |
| Configuration: Transformer (no pretraining) | Task: TAPE Secondary Structure Dataset: CB513 | 0.7 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransformer (no pretraining): CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure |
| Configuration: Alignment | Task: TAPE Secondary Structure Dataset: CB513 | 0.8 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure |
| Model: TAPE Unirep | Task: TAPE Secondary Structure Dataset: CB513 | 0.73 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure |
| Configuration: ResNet (no pretraining) | Task: TAPE Secondary Structure Dataset: CB513 | 0.7 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceResNet (no pretraining): CB513 CB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure |
| Configuration: LSTM (no pretraining) | Task: TAPE Secondary Structure Dataset: CB513 | 0.71 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure |
| Model: TAPE Transformer | Task: TAPE Secondary Structure Dataset: CB513 | 0.73 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure |
| Method: TAPE One Hot | Task: TAPE Secondary Structure Dataset: CB513 | 0.69 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure |
| Model: TAPE LSTM | Task: TAPE Secondary Structure Dataset: CB513 | 0.75 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure |
| Model: TAPE ResNet | Task: TAPE Secondary Structure Dataset: CB513 | 0.75 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceCB513 test set; train/test proteins filtered at 25% sequence identity Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
7 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.reported_population.count 513 Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.reported_population.unit proteins; metric counts residues Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.split CB513 test set; train/test proteins filtered at 25% sequence identity Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.subset Not reported Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name CB513 Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnSecondary structure; Table2,p.7,row2(No pretraining/LSTM),columnSecondary structure; Table2,p.7,row3(No pretraining/ResNet),columnSecondary structure; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnSecondary structure; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnSecondary structure; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnSecondary structure; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnSecondary structure; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnSecondary structure; Table2,p.7,row9(One-hot baseline/One-hot),columnSecondary structure; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnSecondary structure Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-dataset-c40c5d875e595c406a