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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
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10 evaluations · 10 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Model: TAPE ResNet | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.17 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE ResNet: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology |
| Model: TAPE Bepler | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.17 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE Bepler: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology |
| Model: TAPE LSTM | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.26 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE LSTM: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology |
| Method: TAPE One Hot | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.09 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE One Hot: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology |
| Configuration: Alignment | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.09 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceAlignment: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology |
| Configuration: Transformer (no pretraining) | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.09 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransformer (no pretraining): SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row1(No pretraining/Transformer),columnRemote homology |
| Model: TAPE Unirep | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.23 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTAPE Unirep: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology |
| Configuration: LSTM (no pretraining) | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.12 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceLSTM (no pretraining): SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row2(No pretraining/LSTM),columnRemote homology |
| Model: TAPE Transformer | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.21 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTAPE Transformer: SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology |
| Configuration: ResNet (no pretraining) | Task: TAPE Remote Homology Detection Dataset: SCOP1.75 fold-level test | 0.1 accuracy fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceResNet (no pretraining): SCOP1.75 fold-level test Held-out evolutionary groups; fold-level classification into 1,195 folds Aggregation: Not reported tape primary benchmark evidence · Table2,p.7,row3(No pretraining/ResNet),columnRemote homology |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
7 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.reported_population.count 718 Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.reported_population.unit protein domains Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.source_locator Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.split Held-out evolutionary groups; fold-level classification into 1,195 folds Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.subset Not reported Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name SCOP1.75 fold-level test Context-only references | tape primary benchmark evidence Results on downstream supervised tasks; Table2,p.7,row1(No pretraining/Transformer),columnRemote homology; Table2,p.7,row2(No pretraining/LSTM),columnRemote homology; Table2,p.7,row3(No pretraining/ResNet),columnRemote homology; Table2,p.7,row4(Self-supervised pretraining/Transformer),columnRemote homology; Table2,p.7,row5(Self-supervised pretraining/LSTM),columnRemote homology; Table2,p.7,row6(Self-supervised pretraining/ResNet),columnRemote homology; Table2,p.7,row7(Supervised pretraining/Bepler supervised LSTM),columnRemote homology; Table2,p.7,row8(Self-supervised pretraining/UniRep mLSTM),columnRemote homology; Table2,p.7,row9(One-hot baseline/One-hot),columnRemote homology; Table2,p.7,row10(Task-specific alignment/HMM baseline/Alignment),columnRemote homology Version: 1906.08230v1 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-dataset-b84068b24ba74c6f4a