The split of ProteinGym indel DMS assays that ProteinGym evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.
These checks assess whether the evidence supports a reproducible investigation. A source-checked score alone does not meet these requirements.
Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
27 evaluations · 36 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: HMM | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.744 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceHMM on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(HMM), column(Zero-shot indels, all assays, AUC) |
| Configuration: HMM | Task: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.389 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceHMM on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(HMM), column(Zero-shot indels, all assays, Spearman) |
| Configuration: HMM | Task: ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.518 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceHMM on ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(HMM), column(Zero-shot indels, designed or natural assays, Spearman) |
| Configuration: HMM | Task: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.373 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceHMM on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(HMM), column(Zero-shot indels, library assays, Spearman) |
| Configuration: ProGen2 M | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.776 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProGen2 M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(models ProGen2 M), column(Zero-shot indels, all assays, AUC) |
| Configuration: ProGen2 M | Task: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.465 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProGen2 M on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(models ProGen2 M), column(Zero-shot indels, all assays, Spearman) |
| Configuration: ProGen2 M | Task: ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.205 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceZero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(models ProGen2 M), column(Zero-shot indels, designed or natural assays, Spearman) |
| Configuration: ProGen2 M | Task: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.472 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProGen2 M on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(models ProGen2 M), column(Zero-shot indels, library assays, Spearman) |
| Configuration: ProtGPT2 | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.62 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProtGPT2 on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(language ProtGPT2), column(Zero-shot indels, all assays, AUC) |
| Configuration: ProtGPT2 | Task: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.191 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProtGPT2 on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(language ProtGPT2), column(Zero-shot indels, all assays, Spearman) |
| Configuration: ProtGPT2 | Task: ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.128 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceZero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(language ProtGPT2), column(Zero-shot indels, designed or natural assays, Spearman) |
| Configuration: ProtGPT2 | Task: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.185 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceProtGPT2 on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(language ProtGPT2), column(Zero-shot indels, library assays, Spearman) |
| Configuration: PROVEAN | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.725 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePROVEAN on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(PROVEAN), column(Zero-shot indels, all assays, AUC) |
| Configuration: PROVEAN | Task: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.347 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePROVEAN on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(PROVEAN), column(Zero-shot indels, all assays, Spearman) |
| Configuration: PROVEAN | Task: ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.585 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceZero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(PROVEAN), column(Zero-shot indels, designed or natural assays, Spearman) |
| Configuration: PROVEAN | Task: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.306 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourcePROVEAN on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(PROVEAN), column(Zero-shot indels, library assays, Spearman) |
| Configuration: RITA L | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.773 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRITA L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Protein RITA L), column(Zero-shot indels, all assays, AUC) |
| Configuration: RITA L | Task: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.457 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRITA L on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Protein RITA L), column(Zero-shot indels, all assays, Spearman) |
| Configuration: RITA L | Task: ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.519 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceZero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Protein RITA L), column(Zero-shot indels, designed or natural assays, Spearman) |
| Configuration: RITA L | Task: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.443 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceRITA L on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Protein RITA L), column(Zero-shot indels, library assays, Spearman) |
| Configuration: TranceptEVE M | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.754 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranceptEVE M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(TranceptEVE M), column(Zero-shot indels, all assays, AUC) |
| Configuration: TranceptEVE M | Task: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.424 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranceptEVE M on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(TranceptEVE M), column(Zero-shot indels, all assays, Spearman) |
| Configuration: TranceptEVE M | Task: ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.587 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceZero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(TranceptEVE M), column(Zero-shot indels, designed or natural assays, Spearman) |
| Configuration: TranceptEVE M | Task: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.426 spearman correlation · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranceptEVE M on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(TranceptEVE M), column(Zero-shot indels, library assays, Spearman) |
| Configuration: Tranception L | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.741 auc fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Tranception L), column(Zero-shot indels, all assays, AUC) |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| description The split of ProteinGym indel DMS assays that ProteinGym evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits. Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name ProteinGym indel DMS assays (ProteinGym split) Context-only references | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design No field-specific location recorded Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
Stable ID: proteingym-dataset-proteingym-indel-dms-assays