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Evaluations and results
4 evaluations · 9 results. Different protocols are not a single leaderboard.
Sorted by Spearman (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
All 9 result rows with coverage, uncertainty and sources
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| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: Tranception L | Task: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.741 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Tranception L), column(Zero-shot indels, all assays, AUC) |
| Configuration: Tranception L | Task: ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.395 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Tranception L), column(Zero-shot indels, all assays, Spearman) |
| Configuration: Tranception L | Task: ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.563 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceZero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Tranception L), column(Zero-shot indels, designed or natural assays, Spearman) |
| Configuration: Tranception L | Task: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Dataset subset: ProteinGym indel DMS assays (ProteinGym split) | 0.387 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, row(Tranception L), column(Zero-shot indels, library assays, Spearman) |
| Configuration: Tranception L | Task: ProteinGym ZS-SUB-AUC: Zero-shot substitutions, AUC Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.739 AUROC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-SUB-AUC: Zero-shot substitutions, AUC Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(Tranception L), column(Zero-shot substitutions, AUC) |
| Configuration: Tranception L | Task: ProteinGym ZS-SUB-MCC: Zero-shot substitutions, MCC Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.341 MCC unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-SUB-MCC: Zero-shot substitutions, MCC Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(Tranception L), column(Zero-shot substitutions, MCC) |
| Configuration: Tranception L | Task: ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10% Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.779 NDCG at 10% unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10% Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(Tranception L), column(Zero-shot substitutions, NDCG@10%) |
| Configuration: Tranception L | Task: ProteinGym ZS-SUB-RECALL: Zero-shot substitutions, top 10% recall Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.22 Top 10% recall fraction · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-SUB-RECALL: Zero-shot substitutions, top 10% recall Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(Tranception L), column(Zero-shot substitutions, top 10% recall) |
| Configuration: Tranception L | Task: ProteinGym ZS-SUB-SPEARMAN: Zero-shot substitutions, Spearman Dataset subset: ProteinGym substitution DMS assays (ProteinGym split) | 0.434 Spearman unitless · higher Uncertainty: Not yet extracted Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTranception L on ProteinGym ZS-SUB-SPEARMAN: Zero-shot substitutions, Spearman Zero-shot scoring of substitution assays, averaged over assays with the correction the paper describes. Aggregation: Not reported ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 2, row(Tranception L), column(Zero-shot substitutions, Spearman) |
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Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: source checked
1 source record and release history
- ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: proteingym-method-tranception-l
- areas
- proteins-complexes
- source locator
- Table 2, row(Tranception L)
- missing metadata
- checkpoint revision: reason: unreported; parameters: reason: unextracted
- provenance note
- Fitness prediction model evaluated by the ProteinGym authors under their harness.
Related records
- system: Tranception L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- system: Tranception L on ProteinGym ZS-INDEL-SPEARMAN-ALL: Zero-shot indels, all assays, Spearman
- system: Tranception L on ProteinGym ZS-INDEL-SPEARMAN-DESIGNED: Zero-shot indels, designed or natural assays, Spearman
- system: Tranception L on ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman
- system: Tranception L on ProteinGym ZS-SUB-AUC: Zero-shot substitutions, AUC
- system: Tranception L on ProteinGym ZS-SUB-MCC: Zero-shot substitutions, MCC
- system: Tranception L on ProteinGym ZS-SUB-NDCG: Zero-shot substitutions, NDCG@10%
- system: Tranception L on ProteinGym ZS-SUB-RECALL: Zero-shot substitutions, top 10% recall
- system: Tranception L on ProteinGym ZS-SUB-SPEARMAN: Zero-shot substitutions, Spearman