ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
Zero-shot indels, all assays, AUC. Scored with AUC on ProteinGym indel DMS assays. Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated.
Overview
Zero-shot indels, all assays, AUC. Scored with AUC on ProteinGym indel DMS assays. Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
auc (fraction) · Higher values are better.
ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC · ProteinGym indel DMS assays (ProteinGym split)
Evidence origin: Author-reported evaluation.
ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, column(Zero-shot indels, all assays, AUC)- MSE is better when lower; every other metric here is better when higher.
- Zero-shot, supervised and indel benchmarks use different protocols and assay sets, so their figures are not comparable to each other.
Comparison details and limitations
Every method ProteinGym reports on Zero-shot indels, all assays, AUC, scored with AUC on ProteinGym indel DMS assays.
- Author-reported numbers, source checked but not independently reproduced.
Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Showing 9 of 9 matching rows.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- HMM on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- ProGen2 M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- ProtGPT2 on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- PROVEAN on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- RITA L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- TranceptEVE M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- Tranception L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- Tranception M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- WaveNet on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-proteingym Individual claims | ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design Table 4, column(Zero-shot indels, all assays, AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: proteingym-association-zs-indel-auc Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
1 source records and release history
- ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: proteingym-task-zs-indel-auc
- areas
- proteins-complexes
- tasks
- Zero-shot indels, all assays, AUC
- metric
- AUC
- metric direction
- higher
- dataset
- ProteinGym indel DMS assays
- protocol
- Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated.
- source locator
- Table 4, column(Zero-shot indels, all assays, AUC)
- comparison panels
- id: proteingym-panel-zs-indel-auc; title: ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC; protocol id: proteingym-task-zs-indel-auc; dataset id: proteingym-dataset-proteingym-indel-dms-assays; metric: auc; unit: fraction; direction: higher; result ids: proteingym-result-hmm-zs-indel-auc-auc; proteingym-result-wavenet-zs-indel-auc-auc; proteingym-result-provean-zs-indel-auc-auc; proteingym-result-rita-l-zs-indel-auc-auc; proteingym-result-protgpt2-zs-indel-auc-auc; proteingym-result-progen2-m-zs-indel-auc-auc; proteingym-result-tranception-m-zs-indel-auc-auc; proteingym-result-tranception-l-zs-indel-auc-auc; proteingym-result-trancepteve-m-zs-indel-auc-auc; source ids: evidence-expansion-proteingym-a3b08cc4; source locator: Table 4, column(Zero-shot indels, all assays, AUC); context: Every method ProteinGym reports on Zero-shot indels, all assays, AUC, scored with AUC on ProteinGym indel DMS assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; MSE is better when lower; every other metric here is better when higher.; Zero-shot, supervised and indel benchmarks use different protocols and assay sets, so their figures are not comparable to each other.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: ProteinGym
- subject: ProteinGym ZS-INDEL-AUC: part of discovery-benchmark-proteingym
- benchmark: HMM on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: ProGen2 M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: ProtGPT2 on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: PROVEAN on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: RITA L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: TranceptEVE M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: Tranception L on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: Tranception M on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC
- benchmark: WaveNet on ProteinGym ZS-INDEL-AUC: Zero-shot indels, all assays, AUC