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ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman

Zero-shot indels, library assays, Spearman. Scored with Spearman on ProteinGym indel DMS assays. Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated.

9 evaluations · 9 results

Overview

Zero-shot indels, library assays, Spearman. Scored with Spearman on ProteinGym indel DMS assays. Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Results

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ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman

spearman (correlation) · Higher values are better.

ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman · ProteinGym indel DMS assays (ProteinGym split)

Evidence origin: Author-reported evaluation.

ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design · Table 4, column(Zero-shot indels, library assays, Spearman)
  • MSE is better when lower; every other metric here is better when higher.
  • Zero-shot, supervised and indel benchmarks use different protocols and assay sets, so their figures are not comparable to each other.
Comparison details and limitations

Every method ProteinGym reports on Zero-shot indels, library assays, Spearman, scored with Spearman on ProteinGym indel DMS assays.

  • Author-reported numbers, source checked but not independently reproduced.

Automated source review: 2026-09-18. Numerical source review does not establish independent reproduction.

Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.

Showing 9 of 9 matching rows.

Tested configuration
-1-0.500.51
Reported score
  1. ProGen2 M0.472
  2. RITA L0.443
  3. TranceptEVE M0.426
  4. Tranception M0.395
  5. Tranception L0.387
  6. HMM0.373
  7. WaveNet0.323
  8. PROVEAN0.306
  9. ProtGPT20.185

Methods and evaluation design

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Evaluation design

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Strengths, limitations and unresolved questions

Evidence

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Evidence table

Inspect claims, sources and review details

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statementOriginal source and locationReview and provenance
Relationship: part of
discovery-benchmark-proteingym
Individual claims		ProteinGym: Large-Scale Benchmarks for Protein Fitness Prediction and Design

Original source ↗

Table 4, column(Zero-shot indels, library assays, Spearman)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.522924+00:00

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-proteingym

Claim: proteingym-association-zs-indel-spearman-library

Source artifact SHA-256: a3b08cc4a6befd64620cf0f287d78d55a36dc2639955f52c5655f83833c50104

Hash scope: Exact retrieved primary paper artifact bytes.

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: proteingym-task-zs-indel-spearman-library

areas
proteins-complexes
tasks
Zero-shot indels, library assays, Spearman
metric
Spearman
metric direction
higher
dataset
ProteinGym indel DMS assays
protocol
Zero-shot scoring of insertion and deletion assays, split by how the test sequences were generated.
source locator
Table 4, column(Zero-shot indels, library assays, Spearman)
comparison panels
id: proteingym-panel-zs-indel-spearman-library; title: ProteinGym ZS-INDEL-SPEARMAN-LIBRARY: Zero-shot indels, library assays, Spearman; protocol id: proteingym-task-zs-indel-spearman-library; dataset id: proteingym-dataset-proteingym-indel-dms-assays; metric: spearman; unit: correlation; direction: higher; result ids: proteingym-result-hmm-zs-indel-spearman-library-spearman; proteingym-result-wavenet-zs-indel-spearman-library-spearman; proteingym-result-provean-zs-indel-spearman-library-spearman; proteingym-result-rita-l-zs-indel-spearman-library-spearman; proteingym-result-protgpt2-zs-indel-spearman-library-spearman; proteingym-result-progen2-m-zs-indel-spearman-library-spearman; proteingym-result-tranception-m-zs-indel-spearman-library-spearman; proteingym-result-tranception-l-zs-indel-spearman-library-spearman; proteingym-result-trancepteve-m-zs-indel-spearman-library-spearman; source ids: evidence-expansion-proteingym-a3b08cc4; source locator: Table 4, column(Zero-shot indels, library assays, Spearman); context: Every method ProteinGym reports on Zero-shot indels, library assays, Spearman, scored with Spearman on ProteinGym indel DMS assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; MSE is better when lower; every other metric here is better when higher.; Zero-shot, supervised and indel benchmarks use different protocols and assay sets, so their figures are not comparable to each other.; review: method: automated_source_review; date: 2026-09-18
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