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6 evaluations · 12 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: TransBind | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.951 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransBind: transcription-factor DNA binding-site prediction Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction; Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column |
| Configuration: DeepSEA | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.251 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepSEA: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DeepSEA, column AUPR; XML row2 column3 |
| Configuration: TransBind | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.374 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransBind: transcription-factor DNA binding-site prediction Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row TransBind, column AUPR; XML row7 column3 |
| Configuration: TBiNet | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.94 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTBiNet: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row TBiNet, column AUROC; XML row4 column2 |
| Configuration: DanQ | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.925 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDanQ: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUROC; XML row3 column2 |
| Configuration: EPBDXDNABERT-2 | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.949 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceEPBDXDNABERT-2: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row EPBDXDNABERT-2, column AUROC; XML row6 column2 |
| Configuration: DeepSEA | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.893 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDeepSEA: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DeepSEA, column AUROC; XML row2 column2 |
| Configuration: TBiNet | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.335 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceTBiNet: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row TBiNet, column AUPR; XML row4 column3 |
| Configuration: EPBDXDNABERT-2 | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.326 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceEPBDXDNABERT-2: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row EPBDXDNABERT-2, column AUPR; XML row6 column3 |
| Configuration: finetuned DNABERT-2 | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.918 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcefinetuned DNABERT-2: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row finetuned DNABERT-2, column AUROC; XML row5 column2 |
| Configuration: DanQ | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.306 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDanQ: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUPR; XML row3 column3 |
| Configuration: finetuned DNABERT-2 | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.296 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourcefinetuned DNABERT-2: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row finetuned DNABERT-2, column AUPR; XML row5 column3 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
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Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
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4 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.split test Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.version Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| description No value recorded Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| name genome-wide TF binding sites Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: reported-dataset-034c60a2dabc73