Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
1 evaluation · 2 results. Different protocols are not a single leaderboard.
Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) · Dataset: genome-wide TF binding sites
Sorted by AUPRC (higher is better). The best value in each column is highlighted. Decimals are rounded for display; each value links to the printed value and its source.
| Tested configuration | AUPRC | AUROC |
|---|---|---|
| DanQEvaluation | 0.306 | 0.925 |
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: DanQ | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.925 AUROC unitless · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDanQ: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUROC; XML row3 column2 |
| Configuration: DanQ | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.306 AUPRC fraction · higher Uncertainty: Not reported by the source Coverage: Not reported scored / Not reported eligible | Independent external evaluation · Source checkedMethods, coverage and sourceDanQ: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row DanQ, column AUPR; XML row3 column3 |
Source checking is not independent reproduction. Release 2026-11-02-a7f03c9e55a5.
0 of 4 readiness checks met. These checks assess whether the evidence supports a reproducible investigation; a source-checked score alone does not meet them.
Release 2026-11-02-a7f03c9e55a5 · Evidence verified: Not verified
Exact outcomes, predictions, identifiers and evaluator are connected.
Missing or unresolved evidence
Verified: Not verified
Replay evidence includes annotations and an assessment of dependence. Unknown independence permits descriptive analysis only.
Missing or unresolved evidence
Verified: Not verified
A pinned recipe describes the inputs, environment and resource requirements.
Missing or unresolved evidence
Verified: Not verified
Separate data and exposure records support an independent test.
Missing or unresolved evidence
Verified: Not verified
Readiness describes the evidence in this release. Availability on your computer is checked separately when an investigation runs. Existing data exposure can prevent independent validation even when files are available.
No verified artifact manifest is connected to this record yet. The gaps above identify what is needed before analysis can begin.
Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Comparison: adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: aggregation Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: budget Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: dataset version Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: inputs Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: metric implementation Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: population Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: protocol id paper-protocol-6821afc366eb11d0c6 Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: split DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Comparison: subset TF-cell-type binding on held-out chromosomes8and9 Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded independent paper Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Release 2026-11-02-a7f03c9e55a5 · Record review: needs review
Stable ID: paper-evaluation-3db1955079e53447ee