Result

AUROC of TransBind on genome-wide TF binding sites

0.951 AUROC

Methods

Tested configuration: TransBind
Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)
Dataset: genome-wide TF binding sites
Procedure: Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Evaluation: TransBind: transcription-factor DNA binding-site prediction
Coverage: Not reported scored / Not reported eligible
Uncertainty: Not yet extracted
Evidence: Author-reported evaluation · source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction; Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Adaptation: Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Metric direction higher Individual claims	Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Original source ↗ Table 2., row TransBind, column AUROC; XML row7 column2 Version: version of record Retrieved: 2026-09-17T07:56:18.711445+00:00	source checked ["automated-source-review"] · 2026-09-17 author reported Audit details Field: `attributes.metric_direction` Claim: paper-claim-91c6b63896f31fade5 Source artifact SHA-256: `5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact
Printed value 0.9508 Individual claims	Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Original source ↗ Table 2, TransBind row, AUROC column Version: version of record Retrieved: 2026-09-16T10:33:58.585Z	source checked ["independent-cell-check"] · 2026-09-16T10:33:58.585Z author reported Audit details Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness. Field: `attributes.printed_value` Claim: claim-lit-b4-023 Source artifact SHA-256: `5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0` Hash scope: Hash scope not separately documented; inspect source record Inspected artifact Extraction artifact SHA-256: `5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0` Extraction artifact

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Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

2 source records and release history

Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record
Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: lit-b4-023

areas: molecular-interactions
tasks: transcription-factor DNA binding-site prediction
printed value: 0.9508
numeric value: 0.9508
metric: auroc
metric direction: higher
unit: unitless
source locator: Table 2, TransBind row, AUROC column
review: method: independent-cell-check; reviewer: rewire-deterministic-table-checker; reviewed at: 2026-09-16T10:33:58.585Z; evidence: Table 2, TransBind row, AUROC column; cell: 0.9508; artifact sha256: 5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13145115/fullTextXML; method note: primary XML source; exact label and cell match; reviewer note: version v1; note: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.
legacy id: lit-b4-023
missing metadata: dataset version: reason: unextracted; model version: reason: unextracted; uncertainty: reason: unextracted

Related records

evaluation: TransBind: transcription-factor DNA binding-site prediction
subject: Reported AUROC for TransBind
subject: TransBind · AUROC · genome-wide TF binding sites: attributes.metric_direction

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