0.951 AUROC
TransBind · AUROC · genome-wide TF binding sites
- Tested configuration
- TransBind
- Protocol
- TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)
- Dataset
- genome-wide TF binding sites
- Procedure
- Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
- Evaluation
- TransBind: transcription-factor DNA binding-site prediction
- Coverage
- scored: unreported; eligible: unreported
- Uncertainty
- Not reported
- Evidence
- Author-reported evaluation · source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction; Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Reproduction
- Split
- DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
- Adaptation
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- Scoring implementation
- Not reported
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.metric_direction higher Individual claims | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2., row TransBind, column AUROC; XML row7 column2 Version: version of record | source checked automated source review · 2026-09-17 author reported Audit detailsField: Claim: paper-claim-91c6b63896f31fade5 Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.printed_value 0.9508 Individual claims | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2, TransBind row, AUROC column Version: version of record | source checked primary xml exact label cell check · 2026-09-16T10:33:58.585Z author reported Audit detailsExact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness. Field: Claim: claim-lit-b4-023 Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record Extraction artifact SHA-256: |
Sources and history
View linked audit checks and correction history
Release 2026-09-29-06401fd5b220 · Record review: source checked
2 source records and release history
- Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record
- Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-b4-023
- areas
- molecular-interactions
- tasks
- transcription-factor DNA binding-site prediction
- printed value
- 0.9508
- numeric value
- 0.9508
- metric
- AUROC
- metric direction
- higher
- unit
- fraction
- uncertainty
- Not reported
- source locator
- Table 2, TransBind row, AUROC column
- review
- method: primary_xml_exact_label_cell_check; reviewer: rewire deterministic table checker v1; reviewed at: 2026-09-16T10:33:58.585Z; notes: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.; evidence: Table 2, TransBind row, AUROC column; cell: 0.9508; artifact sha256: 5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13145115/fullTextXML
- legacy id
- lit-b4-023
- legacy row
- id: lit-b4-023; paper id: transbind-2026; domain id: molecular-interactions; task: transcription-factor DNA binding-site prediction; model: TransBind; model version: Not reported; dataset: genome-wide TF binding sites; dataset version: Not reported; split: test; metric: AUROC; value: 0.9508; unit: fraction; uncertainty: Not reported; protocol: Integrates protein and DNA embeddings for TFBS prediction on paper test dataset; source locator: Table 2, TransBind row, AUROC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13145115/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:37:05Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract