Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction
2026 · version of record · Peer-reviewed
What this source contributed
Records in this release that cite this source. A record can cite several sources.
Results
Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.
| Model or configuration | Metric | Value | Dataset | Evaluation |
|---|---|---|---|---|
| TransBind | AUPRC | 0.3741 fraction | genome-wide TF binding sites | TransBind: transcription-factor DNA binding-site prediction |
| TransBind | AUROC | 0.9508 unitless | genome-wide TF binding sites | TransBind: transcription-factor DNA binding-site prediction |
Claims
Statements this source supports, each with where in the source it was checked.
- Reported AUROC for TransBind: Printed value 0.9508 (Table 2, TransBind row, AUROC column)
Models, benchmarks and other records
Configurations (1)
Tasks (1)
Datasets (1)
Evaluations (1)
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
18 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Artifact retrieved at 2026-09-16T10:33:58.585Z Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact SHA-256 5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0 Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13145115/fullTextXML Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Doi 10.1093/nargab/lqag047 Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Missing metadata: licence: reason unextracted Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Publication status peer_reviewed Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-09-15T23:37:05Z Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Scope decision included Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Url https://pmc.ncbi.nlm.nih.gov/articles/PMC13145115/ Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Version version of record Source metadata | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction No field-specific location recorded Version: version of record | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-11-02-a7f03c9e55a5 · Record review: discovered
Primary paper retained with its original identifier. Metadata inherited from the literature collection; individual result checks are separate.
Technical metadata and extraction receipts
Stable ID: transbind-2026
- areas
- molecular-interactions
- url
- https://pmc.ncbi.nlm.nih.gov/articles/PMC13145115/
- version
- version of record
- retrieved at
- 2026-09-15T23:37:05Z
- doi
- 10.1093/nargab/lqag047
- publication status
- peer_reviewed
- year
- 2026
- artifact sha256
- 5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0
- artifact url
- https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13145115/fullTextXML
- artifact retrieved at
- 2026-09-16T10:33:58.585Z
- scope decision
- included
- missing metadata
- licence: reason: unextracted