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Release 2026-09-29-06401fd5b220 · Evidence verified: Not verified
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1 evaluation · 2 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: TransBind | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.951 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransBind: transcription-factor DNA binding-site prediction Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction; Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2, TransBind row, AUROC column |
| Configuration: TransBind | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.374 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Author-reported evaluation · Source checkedMethods, coverage and sourceTransBind: transcription-factor DNA binding-site prediction Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row TransBind, column AUPR; XML row7 column3 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
38 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.aggregation Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.budget Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.dataset_version Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.comparison.inputs Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUPR, TF-cell-type binding on held-out chromosomes8and9 Shared locator for this statement’s cited sources; not a separate locator for each citation. Version: version of record | missing or unspecified No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: evaluation-lit-b4-023