Result

0.326 AUPR

EPBDXDNABERT-2: AUPR on TF-cell-type binding on held-out chromosomes8and9

Tested configuration: EPBDXDNABERT-2
Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)
Dataset: genome-wide TF binding sites
Procedure: Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Evaluation: EPBDXDNABERT-2: TF-cell-type binding on held-out chromosomes8and9
Coverage: scored: unreported; eligible: unreported
Uncertainty: Not reported
Evidence: Result quoted from another source · source checkedIntegrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row EPBDXDNABERT-2, column AUPR; XML row6 column3

A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.

Reproduction

Split: DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
Adaptation: Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Scoring implementation: Not reported

No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.

Access requirements and official instructions: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction)

Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.

Evidence

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Evidence table

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1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-29-06401fd5b220
Property and statement	Original source and location	Review and provenance
Reported result 0.3260 Individual claims	Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Original source ↗ Table 2., row EPBDXDNABERT-2, column AUPR; XML row6 column3 Version: version of record Retrieved: 2026-09-17T07:56:18.711445+00:00	source checked Primary-table transcription and separate automated source review · 2026-09-17 paper compilation Audit details Source checked does not mean experimentally reproduced. Field: `attributes.printed_value` Source artifact SHA-256: `5d777f5925e941b7d087035d5d87e79ef75ae8d6456a770ffe8c527da566fee0` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

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Release 2026-09-29-06401fd5b220 · Record review: source checked

1 source records and release history

Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Original source · version of record

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Technical metadata and extraction receipts

Stable ID: paper-result-afd5bc7f082f6ab7e4

areas: molecular-interactions
tasks: transcription-factor DNA binding-site prediction
printed value: 0.3260
numeric value: 0.3260
metric: AUPR
metric direction: higher
unit: fraction
uncertainty: Not reported
eligible count: Not reported
scored count: Not reported
reported population: Not reported
source locator: Table 2., row EPBDXDNABERT-2, column AUPR; XML row6 column3
source occurrences: source id: part2-transbind-2026; locator: Table 2., row EPBDXDNABERT-2, column AUPR; XML row6 column3
review: method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
missing metadata: scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported

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evaluation: EPBDXDNABERT-2: TF-cell-type binding on held-out chromosomes8and9

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