Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
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1 evaluation · 2 results. Different protocols are not a single leaderboard.
Applied filters: All linked evaluations
| Tested configuration | Protocol and dataset | Finding | Evidence and details |
|---|---|---|---|
| Configuration: EPBDXDNABERT-2 | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.949 AUROC fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceEPBDXDNABERT-2: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row EPBDXDNABERT-2, column AUROC; XML row6 column2 |
| Configuration: EPBDXDNABERT-2 | Protocol: TF-cell-type binding on held-out chromosomes8and9 (transcription-factor DNA binding-site prediction) Dataset: genome-wide TF binding sites | 0.326 AUPR fraction · higher Uncertainty: Not reported Coverage: Not reported scored / Not reported eligible | Result quoted from another source · Source checkedMethods, coverage and sourceEPBDXDNABERT-2: TF-cell-type binding on held-out chromosomes8and9 Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Aggregation: Not reported Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction · Table 2., row EPBDXDNABERT-2, column AUPR; XML row6 column3 |
Source checking is not independent reproduction. Release 2026-09-29-06401fd5b220.
Per-label AUROC/AUPR macro-averaged over 690 labels. Same Table 2 test cohort; methods differ in additional protein/dynamics inputs. DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test.
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19 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.adaptation Paper-specific evaluated pipeline; exact checkpoint not inferred from label Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.aggregation Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.budget Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.dataset_version Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.inputs Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.metric_implementation Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.population Not reported Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | missing or unspecified No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id paper-protocol-6821afc366eb11d0c6 Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.split DeepSEA-derived 690 TF-cell-type labels; chr 7 validation; remaining autosomes+X training; chr 8/9 test. Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.subset TF-cell-type binding on held-out chromosomes8and9 Context-only references | Integrating protein and DNA embeddings for improving genome-wide transcription factor binding site prediction Table 2.: AUROC, TF-cell-type binding on held-out chromosomes8and9 Version: version of record | not individually reviewed No individual claim review recorded paper compilation Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
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Release 2026-09-29-06401fd5b220 · Record review: needs review
Stable ID: paper-evaluation-2432257e60a36aace9