You et al. 2026, Supplementary Information
41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) · Peer-reviewed
What this source contributed
Records in this release that cite this source. A record can cite several sources.
Results
Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.
Claims
Statements this source supports, each with where in the source it was checked.
- tables_not_extracted: gfm2-20261011-you2026-source-supplement: Tables not extracted Supplementary Tables 2 (non-coding RNA classification), 3 (m6A modification), 6 (translation efficiency) and the main-text figures are not extracted in this batch; only the splicing tables 4 and 5 are. (Supplementary Tables 2, 3 and 6)
Models, benchmarks and other records
Models (7)
Configurations (13)
- DNABERT fine-tuned with an appended convolutional layer (You et al. 2026)
- DNABERT2 fine-tuned with an appended convolutional layer (You et al. 2026)
- GENA-LM-base fine-tuned with an appended convolutional layer (You et al. 2026)
- GENA-LM-large fine-tuned with an appended convolutional layer (You et al. 2026)
- NucleotideTransformer fine-tuned with an appended convolutional layer (You et al. 2026)
- RNABERT fine-tuned with an appended convolutional layer (You et al. 2026)
- RNAErnie fine-tuned with an appended convolutional layer (You et al. 2026)
- RNAFM fine-tuned with an appended convolutional layer (You et al. 2026)
- RNAMSM fine-tuned with an appended convolutional layer (You et al. 2026)
- SpliceAI retrained under the authors' framework (You et al. 2026)
- SpliceBERT fine-tuned with an appended convolutional layer (You et al. 2026)
- SpTransformer retrained under the authors' framework (You et al. 2026)
- UTRLM fine-tuned with an appended convolutional layer (You et al. 2026)
Protocols (3)
- GTEx tissue-specific splicing prediction, Splice acceptors and donors (You et al. 2026 Supplementary Table 5)
- GTEx tissue-specific splicing prediction, Splice-15class (You et al. 2026 Supplementary Table 5)
- GTEx tissue-specific splicing prediction, Splice-53class (You et al. 2026 Supplementary Table 5)
Datasets (4)
Evaluations (55)
- DNABERT on NT-splice-sites-acceptors
- DNABERT on NT-splice-sites-all
- DNABERT on NT-splice-sites-donors
- DNABERT2 on NT-splice-sites-acceptors
- DNABERT2 on NT-splice-sites-all
- DNABERT2 on NT-splice-sites-donors
- GENA-LM-base on NT-splice-sites-acceptors
- GENA-LM-base on NT-splice-sites-all
- GENA-LM-base on NT-splice-sites-donors
- GENA-LM-large on NT-splice-sites-acceptors
- GENA-LM-large on NT-splice-sites-all
- GENA-LM-large on NT-splice-sites-donors
- NucleotideTransformer on NT-splice-sites-acceptors
- NucleotideTransformer on NT-splice-sites-all
- NucleotideTransformer on NT-splice-sites-donors
- NucleotideTransformer on the GTEx splicing task, Splice acceptors and donors
- NucleotideTransformer on the GTEx splicing task, Splice-15class
- NucleotideTransformer on the GTEx splicing task, Splice-53class
- RNABERT on NT-splice-sites-acceptors
- RNABERT on NT-splice-sites-all
- RNABERT on NT-splice-sites-donors
- RNAErnie on NT-splice-sites-acceptors
- RNAErnie on NT-splice-sites-all
- RNAErnie on NT-splice-sites-donors
- RNAErnie on the GTEx splicing task, Splice acceptors and donors
Evidence
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Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
25 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.artifact_sha256 cbb69e05045a4526e35479d2c1361ebb9cfadfd968e00675390dad597035d882 Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Artifact url https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12780105/supplementaryFiles Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Doi 10.1038/s41467-025-66899-y Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Licence CC-BY-NC-ND-4.0 Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Media type application/pdf Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Publication status peer_reviewed Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Retrieved at 2026-10-11T00:55:34Z Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| attributes.review.artifact_sha256 cbb69e05045a4526e35479d2c1361ebb9cfadfd968e00675390dad597035d882 Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
| Review: date 2026-10-11 Source metadata | You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Review method2 values
| You et al. 2026, Supplementary Information No field-specific location recorded Version: 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact) | catalogued No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
Release 2026-10-22-1b7cf027e4f6 · Record review: source checked
Supplementary Tables 1-6 of the article, holding the per-method performance tables behind the figures.
Technical metadata and extraction receipts
Stable ID: gfm2-20261011-you2026-source-supplement
- areas
- dna-genomes
- contexts
- research
- url
- https://doi.org/10.1038/s41467-025-66899-y
- doi
- 10.1038/s41467-025-66899-y
- artifact url
- https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12780105/supplementaryFiles
- artifact sha256
- cbb69e05045a4526e35479d2c1361ebb9cfadfd968e00675390dad597035d882
- retrieved at
- 2026-10-11T00:55:34Z
- publication status
- peer_reviewed
- version
- 41467_2025_66899_MOESM1_ESM.pdf inside the Europe PMC supplementaryFiles zip (outer zip 9a0d0a8d8643872ab265e3e6ed7eea944563da4861bf764f97c68fc6aa502525, assembled per request; the member hash is the bound artifact)
- licence
- CC-BY-NC-ND-4.0
- media type
- application/pdf
- source locator
- Supplementary Tables 4 and 5
- review
- method: source-hash-verification; ai-assisted-source-review; reviewer: claude; reviewer note: Claude (Opus 5.5) review agent reviewer-gfm-a, independent of the extractor lit-gfm-2; no human review claimed; date: 2026-10-11; artifact sha256: cbb69e05045a4526e35479d2c1361ebb9cfadfd968e00675390dad597035d882; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12780105/supplementaryFiles; note: Fresh retrieval matches the pinned SHA-256. CC BY-NC-ND 4.0; no copy archived.