scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f

What this source contributed

Records in this release that cite this source. A record can cite several sources.

69 configurations
1 protocol
1 dataset subset
69 evaluations
821 results
3 evidence claims

Results

Values as the source printed them. Compare results only under compatible protocols, datasets and metrics.

Model or configuration	Metric	Value	Dataset	Evaluation
bbknn_knn · hvg, unscaled	Adjusted rand index (clusters vs cell-type labels)	0.939922490216662 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, unscaled	Normalized mutual information (clusters vs cell-type labels)	0.8951246083788629 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, unscaled	Scib clisi	0.860580660350907 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, unscaled	Scib graph connectivity	0.975431624381728 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, unscaled	Scib ilisi	0.3985925302610949 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, unscaled	Scib isolated label F1	0.0972222222222219 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, unscaled	Scib kbet	0.4104174425477235 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, scaled	Adjusted rand index (clusters vs cell-type labels)	0.882850656783028 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, scaled	Normalized mutual information (clusters vs cell-type labels)	0.817019936190885 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, scaled	Scib clisi	0.652346977674116 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, scaled	Scib graph connectivity	0.9832854534661016 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, scaled	Scib ilisi	0.393420430392384 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, scaled	Scib isolated label F1	0.090322580645161 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, scaled	Scib kbet	0.5203078015598745 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, scaled	Adjusted rand index (clusters vs cell-type labels)	0.915275402142792 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, scaled	Normalized mutual information (clusters vs cell-type labels)	0.8610936775446729 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, scaled	Scib clisi	0.663050348098215 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, scaled	Scib graph connectivity	0.9937272740281968 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, scaled	Scib ilisi	0.4046643662429139 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, scaled	Scib isolated label F1	0.088607594936709 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · hvg, scaled	Scib kbet	0.5085855568863342 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, unscaled	Adjusted rand index (clusters vs cell-type labels)	0.9201549564417952 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, unscaled	Normalized mutual information (clusters vs cell-type labels)	0.860431090334227 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, unscaled	Scib clisi	0.855748291189953 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, unscaled	Scib graph connectivity	0.9322396572839252 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, unscaled	Scib ilisi	0.400524797426676 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, unscaled	Scib isolated label F1	0.116666666666667 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
bbknn_knn · full_feature, unscaled	Scib kbet	0.3806229632401189 unitless	pancreas	bbknn_knn · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Adjusted rand index (clusters vs cell-type labels)	0.840503094839173 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Normalized mutual information (clusters vs cell-type labels)	0.8049258902203199 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib asw batch	0.8773995599969351 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib asw label	0.551657270640135 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib cell cycle conservation	0.943701769813826 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib clisi	0.9989870229902308 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib graph connectivity	0.9573493550229556 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib HVG overlap	0.2071099253393 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib ilisi	0.0777312237343109 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib isolated label F1	0.104477611940299 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib isolated label silhouette	0.511869801208377 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib kbet	0.1453703676782958 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · full_feature, unscaled	Scib pcr batch	0.999952826970895 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Adjusted rand index (clusters vs cell-type labels)	0.94198165365471 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Normalized mutual information (clusters vs cell-type labels)	0.901055205916224 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Scib asw batch	0.897589642616812 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Scib asw label	0.598991438746452 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Scib cell cycle conservation	0.520649941042163 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Scib clisi	0.999567890408181 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Scib graph connectivity	0.9786281640828702 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Scib HVG overlap	0.615128686645938 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas
combat_full · hvg, unscaled	Scib ilisi	0.10840353385013 unitless	pancreas	combat_full · scIB official RNA metrics export · pancreas

Claims

Statements this source supports, each with where in the source it was checked.

scIB official RNA metrics export: benchmark membership: Part of scIB (data/metrics.csv row 2, column 2 (NMI_cluster/label))
scvi_embed · full_feature, unscaled: family scVI: Family scVI (scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180)
scvi_embed · hvg, unscaled: family scVI: Family scVI (scIB pinned metrics.csv method scvi_embed; visualization/exampleKeys.R scVI_embed and scVI_embed_HVG_unscaled; website/R/load.R mapping scVI to scvi; website/R/load.R lines 91-93, 106-114 and 175-180)

Models, benchmarks and other records

Protocols (1)

scIB official RNA metrics export · pancreas

Dataset subsets (1)

pancreas

Evaluations (69)

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

14 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-11-02-a7f03c9e55a5
Property and statement	Original source and location	Review and provenance
Access and reuse See original publisher or repository; no blanket licence inferred. Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `attributes.access_and_reuse` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Artifact SHA-256 d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6 Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_sha256` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Artifact url https://raw.githubusercontent.com/theislab/scib-reproducibility/3afbffd3674726e5146797be21cf6bd7470a2c5f/data/metrics.csv Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `attributes.artifact_url` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Hash scope Exact downloaded bytes, before optional gzip storage Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `attributes.hash_scope` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Retrieved at 2026-09-19 Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `attributes.retrieved_at` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Url https://raw.githubusercontent.com/theislab/scib-reproducibility/3afbffd3674726e5146797be21cf6bd7470a2c5f/data/metrics.csv Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `attributes.url` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Version 3afbffd3674726e5146797be21cf6bd7470a2c5f Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `attributes.version` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Description Primary source artifact; cited cells checked separately from scientific interpretation. Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `description` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Search facets None recorded Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `facets` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact
Record ID acquired-source-5eabf9f83e79b736479d Source metadata	scIB: 3afbffd3674726e5146797be21cf6bd7470a2c5f Original source ↗ No field-specific location recorded Version: 3afbffd3674726e5146797be21cf6bd7470a2c5f Retrieved: 2026-09-19	catalogued No individual claim review recorded Audit details Field: `id` Source artifact SHA-256: `d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6` Hash scope: Exact downloaded bytes, before optional gzip storage Inspected artifact

How to read the evidence

Sources and history

Release 2026-11-02-a7f03c9e55a5 · Record review: source checked

Primary source artifact; cited cells checked separately from scientific interpretation.

Release history

No supporting source is linked yet.

Read original source

Download this release (gzip)

Technical metadata and extraction receipts

Stable ID: acquired-source-5eabf9f83e79b736479d

url: https://raw.githubusercontent.com/theislab/scib-reproducibility/3afbffd3674726e5146797be21cf6bd7470a2c5f/data/metrics.csv
artifact url: https://raw.githubusercontent.com/theislab/scib-reproducibility/3afbffd3674726e5146797be21cf6bd7470a2c5f/data/metrics.csv
version: 3afbffd3674726e5146797be21cf6bd7470a2c5f
retrieved at: 2026-09-19
artifact sha256: d130cca3688cfe192e2a6df8fa52a0b345d099e259f79014ccf6b90442e626b6
hash scope: Exact downloaded bytes, before optional gzip storage
access and reuse: See original publisher or repository; no blanket licence inferred.

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